Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS00740 and ABZR87_RS00745 are separated by 156 nucleotidesABZR87_RS00745 and ABZR87_RS00750 are separated by 14 nucleotidesABZR87_RS00750 and ABZR87_RS00755 are separated by 119 nucleotidesABZR87_RS00755 and ABZR87_RS00760 are separated by 0 nucleotides ABZR87_RS00740: ABZR87_RS00740 - adenylate kinase, at 149,556 to 150,224 _RS00740 ABZR87_RS00745: ABZR87_RS00745 - 3-hydroxyacyl-CoA dehydrogenase, at 150,381 to 151,139 _RS00745 ABZR87_RS00750: ABZR87_RS00750 - LysR family transcriptional regulator, at 151,154 to 152,047 _RS00750 ABZR87_RS00755: ABZR87_RS00755 - bile acid:sodium symporter family protein, at 152,167 to 153,198 _RS00755 ABZR87_RS00760: ABZR87_RS00760 - GNAT family N-acetyltransferase, at 153,199 to 153,744 _RS00760
Group Condition ABZR87_RS00740 ABZR87_RS00745 ABZR87_RS00750 ABZR87_RS00755 ABZR87_RS00760
carbon source Trans-2-methyl-2-butenoic (C) N.D. -5.3 -0.1 +0.2 +0.0
carbon source Trans-2-methyl-2-butenoic (C) N.D. -4.9 +0.1 +0.0 +0.1
carbon source Sebacic (C) N.D. -4.0 +0.7 -0.4 +0.2
soil soil EcoFAB sample 1; outgrowth in LB N.D. -3.4 +0.2 -0.4 +0.5
carbon source Octanoic (C) N.D. -2.6 -0.8 +0.4 -0.1
carbon source Protocatechuic Acid (C) N.D. -2.6 +0.1 -0.1 -0.0
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. -1.8 -0.3 -0.4 -0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.5 -0.5 -0.2 -1.0
carbon source propionate (C) N.D. -1.8 -0.3 -0.1 -0.0
carbon source L-Glutamic (C) N.D. -1.0 -0.3 -0.5 -0.2
carbon source Glycerol (C) N.D. -1.5 -0.3 +0.1 -0.0
carbon source Heptanoic (C) N.D. -1.1 -0.2 +0.1 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -1.8 -0.0 -0.1 +0.2
nitrogen source nitrogen source nitrate 5mM N.D. -1.9 -0.2 +0.2 +0.3
root root EcoFAB sample 2; outgrowth in LB N.D. -1.3 +0.0 +0.2 -0.5
carbon source D-Galactose (C) N.D. -1.4 -0.2 -0.0 +0.2
carbon source Protocatechuic Acid (C) N.D. -1.4 +0.0 +0.2 -0.4
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -1.3 +0.2 -0.1 -0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -1.2 +0.2 -0.8 +0.5
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -1.4 +0.1 +0.2 -0.0
soil soil EcoFAB sample 2; outgrowth in LB N.D. -1.4 -0.0 +0.5 -0.0
nitrogen source nitrogen source nitrite 0.5mM N.D. -1.6 +0.4 +0.3 +0.4
root root sample 6; outgrowth in LB N.D. +1.3 -0.6 -0.0 -1.2
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. +1.3 -0.1 -0.6 -0.2
root root sample 4; outgrowth in LB N.D. +1.0 -0.3 +0.5 +0.1
carbon source Octanoic (C) N.D. +0.4 -0.4 +0.9 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.9 -0.2 +0.3 +0.4
carbon source 4-Hydroxybenzoic Acid (C) N.D. +1.6 +0.6 -0.1 -0.0
nitrogen source nitrogen source nitrate 20mM N.D. +1.4 +0.0 +0.3 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.2 +0.7 +0.3 +0.8
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ABZR87_RS00745
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