Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS00680 and ABZR87_RS00685 are separated by 109 nucleotidesABZR87_RS00685 and ABZR87_RS00690 are separated by 254 nucleotidesABZR87_RS00690 and ABZR87_RS00695 are separated by 146 nucleotidesABZR87_RS00695 and ABZR87_RS00700 are separated by 3 nucleotides ABZR87_RS00680: ABZR87_RS00680 - IclR family transcriptional regulator, at 138,724 to 139,494 _RS00680 ABZR87_RS00685: ABZR87_RS00685 - hypothetical protein, at 139,604 to 140,116 _RS00685 ABZR87_RS00690: ABZR87_RS00690 - ester cyclase, at 140,371 to 140,916 _RS00690 ABZR87_RS00695: ABZR87_RS00695 - DUF2167 domain-containing protein, at 141,063 to 141,992 _RS00695 ABZR87_RS00700: ABZR87_RS00700 - site-2 protease family protein, at 141,996 to 142,715 _RS00700
Group Condition ABZR87_RS00680 ABZR87_RS00685 ABZR87_RS00690 ABZR87_RS00695 ABZR87_RS00700
rhizosphere rhizosphere sample 3; outgrowth in LB +0.2 -4.9 -0.0 +0.1 -0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -1.5 +0.0 -0.1 +0.2
rhizosphere rhizosphere sample 8; outgrowth in LB +0.0 -1.4 -0.0 +0.1 -0.0
root root EcoFAB sample 2; outgrowth in LB -0.1 -0.9 -0.3 -0.1 +0.2
rhizosphere rhizosphere sample 7; outgrowth in LB -0.3 -0.7 +0.0 +0.1 -0.3
soil soil EcoFAB sample 1; outgrowth in LB +0.1 -0.2 -1.4 +0.1 +0.4
rhizosphere rhizosphere sample 2; outgrowth in LB +0.0 -1.3 +0.2 +0.1 +0.0
carbon source Sebacic (C) +0.1 -1.3 +0.6 -0.4 +0.1
nitrogen source nitrogen source nitrite 0.5mM -0.1 -0.7 +0.3 +0.1 -0.1
root root sample 5; outgrowth in LB +0.1 -0.6 -0.5 +0.2 +0.1
rhizosphere rhizosphere sample 5; outgrowth in LB +0.5 -0.6 -0.5 +0.1 +0.2
carbon source Azelaic (C) -0.3 -0.3 +0.4 -0.2 +0.1
root root sample 4; outgrowth in LB -0.2 -0.5 +0.4 +0.3 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 -1.0 +0.0 -0.1 +0.2
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.4 -0.8 +0.2 +0.1 +0.2
carbon source Octanoic (C) -0.3 +0.5 -0.2 +0.2 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.5 +0.5 -0.1 +0.3
carbon source succinate (C) -0.1 -0.4 +0.5 +0.3 +0.2
nitrogen source nitrogen source nitrite 5mM -0.3 +0.5 +0.5 +0.1 -0.0
rhizosphere rhizosphere sample 9; outgrowth in LB -0.2 +0.7 -0.2 +0.1 +0.3
soil soil sample 3; outgrowth in LB +0.4 -0.2 +0.6 +0.0 +0.1
carbon source Protocatechuic Acid (C) -0.1 +0.7 +0.3 +0.1 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.6 +0.2 -0.1 +0.3
carbon source Valeric (C) -0.3 +0.6 +0.7 -0.0 +0.1
carbon source Dodecandioic (C) -0.1 +0.8 +0.6 +0.1 +0.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.2 +0.7 +0.4 +0.1 +0.2
phage Ra3_1 +0.3 +0.5 +0.5 +0.0 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.3 +0.6 +0.4 +0.1
carbon source Octanoic (C) +0.1 +0.9 +0.7 +0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 +3.0 +0.5 -0.0 -0.3
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