Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS00650 and ABZR87_RS00655 are separated by 98 nucleotidesABZR87_RS00655 and ABZR87_RS00660 overlap by 4 nucleotidesABZR87_RS00660 and ABZR87_RS00665 overlap by 4 nucleotidesABZR87_RS00665 and ABZR87_RS00670 overlap by 4 nucleotides ABZR87_RS00650: ABZR87_RS00650 - HU family DNA-binding protein, at 134,500 to 134,784 _RS00650 ABZR87_RS00655: ABZR87_RS00655 - HutD family protein, at 134,883 to 135,461 _RS00655 ABZR87_RS00660: ABZR87_RS00660 - formimidoylglutamase, at 135,458 to 136,417 _RS00660 ABZR87_RS00665: ABZR87_RS00665 - amino acid ABC transporter ATP-binding protein, at 136,414 to 137,214 _RS00665 ABZR87_RS00670: ABZR87_RS00670 - amino acid ABC transporter permease, at 137,211 to 137,879 _RS00670
Group Condition ABZR87_RS00650 ABZR87_RS00655 ABZR87_RS00660 ABZR87_RS00665 ABZR87_RS00670
soil soil EcoFAB sample 1; outgrowth in LB N.D. -2.1 +0.3 -1.6 +0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -0.9 +0.0 -1.4 +0.3
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. -0.8 +0.2 -0.9 -0.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. +0.0 +0.0 -1.3 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -0.4 -0.0 -0.7 -0.2
nitrogen source nitrogen source nitrite 5mM N.D. -0.2 -0.0 -1.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.5 +0.1 -1.0 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.3 +0.2 -0.8 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 +0.3 -1.3 +0.3
carbon source Dodecandioic (C) N.D. +0.4 -0.0 -1.1 +0.2
carbon source Azelaic (C) N.D. -0.2 -0.0 -0.7 +0.4
soil soil sample 2; outgrowth in LB N.D. +0.0 +0.4 -0.7 -0.2
nitrogen source nitrogen source nitrate 20mM N.D. -0.7 -0.1 +0.3 +0.1
nitrogen source nitrogen source nitrite 1mM N.D. -0.8 +0.2 +0.1 +0.1
nitrogen source nitrogen source nitrate 5mM N.D. -0.8 +0.3 +0.2 +0.0
carbon source Heptanoic (C) N.D. -0.6 +0.2 +0.2 +0.2
carbon source Octanoic (C) N.D. +0.5 +0.6 -1.5 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 +0.3 +0.3 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 -0.0 +1.0 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 +0.2 +0.8 +0.3
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. +0.9 +0.2 -0.1 -0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.3 +0.3 +0.6 -0.4
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -0.2 +0.6 +0.0 +0.7
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +0.6 +0.2 +0.4 -0.1
soil soil sample 5; outgrowth in LB N.D. +0.3 +0.4 +0.4 +0.3
root root sample 5; outgrowth in LB N.D. +0.1 +0.5 +0.2 +0.7
carbon source Lauric (C) N.D. +0.7 +0.1 +0.4 +0.3
root root sample 6; outgrowth in LB N.D. +0.4 -0.0 +1.2 +0.3
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. +0.2 +0.6 +0.7 +0.8
carbon source Octanoic (C) N.D. +1.1 +0.5 +1.2 -0.1
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