Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS00560 and ABZR87_RS00565 are separated by 13 nucleotidesABZR87_RS00565 and ABZR87_RS00570 are separated by 58 nucleotidesABZR87_RS00570 and ABZR87_RS00575 are separated by 497 nucleotidesABZR87_RS00575 and ABZR87_RS00580 are separated by 28 nucleotides ABZR87_RS00560: ABZR87_RS00560 - DNA-3-methyladenine glycosylase 2, at 114,923 to 116,398 _RS00560 ABZR87_RS00565: ABZR87_RS00565 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 116,412 to 116,960 _RS00565 ABZR87_RS00570: ABZR87_RS00570 - DMT family transporter, at 117,019 to 117,951 _RS00570 ABZR87_RS00575: ABZR87_RS00575 - HipA N-terminal domain-containing protein, at 118,449 to 119,759 _RS00575 ABZR87_RS00580: ABZR87_RS00580 - hypothetical protein, at 119,788 to 120,063 _RS00580
Group Condition ABZR87_RS00560 ABZR87_RS00565 ABZR87_RS00570 ABZR87_RS00575 ABZR87_RS00580
root root sample 6; outgrowth in LB -0.1 +0.4 -0.2 +0.3 -2.4
rhizosphere rhizosphere sample 2; outgrowth in LB -0.3 +0.1 +0.1 +0.0 -1.7
carbon source L-Glutamic (C) +0.3 +0.1 +0.3 +0.4 -2.4
carbon source butyrate (C) +0.1 -0.2 +0.3 +0.6 -2.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.0 -0.5 +0.2 +0.8 -1.6
root root sample 5; outgrowth in LB +0.4 -0.6 +0.1 +0.2 -1.0
carbon source Octanoic (C) -0.1 -0.1 +0.2 +0.6 -1.4
carbon source Trans-2-methyl-2-butenoic (C) +0.2 +0.0 +0.0 +0.7 -1.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.2 +0.2 +0.4 -1.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.8 +0.1 +0.7 -0.2
root root sample 4; outgrowth in LB -0.2 -0.5 +0.5 +0.6 -0.8
soil soil EcoFAB sample 2; outgrowth in LB +0.3 +0.0 -0.2 +0.8 -1.2
carbon source D-Galactose (C) -0.2 +0.0 +0.3 +0.7 -1.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.1 +0.3 +0.2 +0.6 -1.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -0.2 +0.5 +0.8 -0.4
carbon source Octanoic (C) +0.2 +0.7 +0.5 +0.4 -1.5
carbon source Protocatechuic Acid (C) +0.2 -0.0 +0.2 +1.0 -0.8
carbon source Pimelic (C) +0.0 -0.0 +0.4 +1.1 -0.9
carbon source Trans-2-methyl-2-butenoic (C) +0.0 +0.2 +0.2 +0.8 -0.6
carbon source Pimelic (C) +0.2 +0.1 +0.4 +1.4 -1.3
carbon source Glycerol (C) +0.1 +0.1 +0.3 +0.9 -0.5
carbon source adipate (C) +0.0 +0.3 +0.3 +1.3 -0.8
carbon source adipate (C) +0.2 +0.2 +0.4 +1.2 -0.9
carbon source Glycerol (C) +0.0 +0.2 +0.3 +1.0 -0.3
carbon source Pimelic (C) +0.2 +0.1 +0.4 +1.1 -0.4
root root EcoFAB sample 2; outgrowth in LB +0.0 -0.3 +0.2 +1.2 +0.5
carbon source Pimelic (C) +0.1 +0.3 +0.5 +1.4 -0.7
carbon source Sebacic (C) +0.4 +0.3 +0.5 +0.9 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.1 -0.3 +0.1 -0.3 +2.3
soil soil EcoFAB sample 1; outgrowth in LB -0.2 +0.1 +0.4 +1.5 +0.3
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