Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS00395 and ABZR87_RS00400 are separated by 109 nucleotidesABZR87_RS00400 and ABZR87_RS00405 overlap by 1 nucleotidesABZR87_RS00405 and ABZR87_RS00410 are separated by 7 nucleotidesABZR87_RS00410 and ABZR87_RS00415 are separated by 3 nucleotides ABZR87_RS00395: ABZR87_RS00395 - bifunctional riboflavin kinase/FAD synthetase, at 81,322 to 82,320 _RS00395 ABZR87_RS00400: ABZR87_RS00400 - isoleucine--tRNA ligase, at 82,430 to 85,309 _RS00400 ABZR87_RS00405: ABZR87_RS00405 - signal peptidase II, at 85,309 to 85,833 _RS00405 ABZR87_RS00410: ABZR87_RS00410 - DUF4180 domain-containing protein, at 85,841 to 86,218 _RS00410 ABZR87_RS00415: ABZR87_RS00415 - YdcF family protein, at 86,222 to 86,800 _RS00415
Group Condition ABZR87_RS00395 ABZR87_RS00400 ABZR87_RS00405 ABZR87_RS00410 ABZR87_RS00415
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. N.D. N.D. -1.4 -0.4
root root sample 6; outgrowth in LB N.D. N.D. N.D. -0.8 -0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. N.D. N.D. -0.6 -0.5
carbon source Octanoic (C) N.D. N.D. N.D. -0.6 -0.3
soil soil EcoFAB sample 1; outgrowth in LB N.D. N.D. N.D. -0.3 -0.4
nitrogen source nitrogen source nitrate 5mM N.D. N.D. N.D. -0.6 -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. N.D. N.D. -0.7 +0.0
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. N.D. -0.5 -0.1
soil soil sample 7; outgrowth in LB N.D. N.D. N.D. -0.6 +0.1
carbon source Octanoic (C) N.D. N.D. N.D. +0.2 -0.6
root root EcoFAB sample 1; outgrowth in LB N.D. N.D. N.D. -0.5 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -0.4 +0.1
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. N.D. N.D. -0.4 +0.1
carbon source Glycerol (C) N.D. N.D. N.D. -0.4 +0.1
carbon source Pimelic (C) N.D. N.D. N.D. -0.5 +0.1
nitrogen source nitrogen source nitrate 5mM N.D. N.D. N.D. -0.6 +0.3
root root sample 4; outgrowth in LB N.D. N.D. N.D. -0.6 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -0.4 +0.2
carbon source Protocatechuic Acid (C) N.D. N.D. N.D. -0.5 +0.3
carbon source Heptanoic (C) N.D. N.D. N.D. -0.4 +0.2
carbon source Sebacic (C) N.D. N.D. N.D. -0.4 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -0.4 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -0.3 +0.2
carbon source D-Glucose (C) N.D. N.D. N.D. -0.4 +0.4
rhizosphere rhizosphere sample 6; outgrowth in LB N.D. N.D. N.D. -0.4 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -0.3 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. N.D. N.D. -0.3 +0.4
rhizosphere rhizosphere sample 5; outgrowth in LB N.D. N.D. N.D. +0.5 -0.2
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. N.D. N.D. -0.3 +0.8
root root sample 5; outgrowth in LB N.D. N.D. N.D. +0.4 +0.3
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