Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS00390 and ABZR87_RS00395 are separated by 220 nucleotidesABZR87_RS00395 and ABZR87_RS00400 are separated by 109 nucleotidesABZR87_RS00400 and ABZR87_RS00405 overlap by 1 nucleotidesABZR87_RS00405 and ABZR87_RS00410 are separated by 7 nucleotides ABZR87_RS00390: ABZR87_RS00390 - hybrid sensor histidine kinase/response regulator, at 79,269 to 81,101 _RS00390 ABZR87_RS00395: ABZR87_RS00395 - bifunctional riboflavin kinase/FAD synthetase, at 81,322 to 82,320 _RS00395 ABZR87_RS00400: ABZR87_RS00400 - isoleucine--tRNA ligase, at 82,430 to 85,309 _RS00400 ABZR87_RS00405: ABZR87_RS00405 - signal peptidase II, at 85,309 to 85,833 _RS00405 ABZR87_RS00410: ABZR87_RS00410 - DUF4180 domain-containing protein, at 85,841 to 86,218 _RS00410
Group Condition ABZR87_RS00390 ABZR87_RS00395 ABZR87_RS00400 ABZR87_RS00405 ABZR87_RS00410
phage Ra3_1 -4.2 N.D. N.D. N.D. +0.1
phage Ra3_0.1 -3.9 N.D. N.D. N.D. -0.0
phage Ra1_0.1 -3.9 N.D. N.D. N.D. +0.1
phage Ra1_0.01 -3.6 N.D. N.D. N.D. -0.0
phage Ra3_0.01 -2.1 N.D. N.D. N.D. -0.2
rhizosphere rhizosphere sample 9; outgrowth in LB +0.1 N.D. N.D. N.D. -1.4
micoeukaryotes Dictyostellum sp.mixed culture-2 -1.0 N.D. N.D. N.D. -0.3
root root sample 6; outgrowth in LB -0.2 N.D. N.D. N.D. -0.8
carbon source 4-Hydroxybenzoic Acid (C) -1.2 N.D. N.D. N.D. +0.2
soil soil sample 7; outgrowth in LB +0.6 N.D. N.D. N.D. -0.6
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +1.0 N.D. N.D. N.D. -0.6
soil soil EcoFAB sample 1; outgrowth in LB +0.8 N.D. N.D. N.D. -0.3
root root EcoFAB sample 2; outgrowth in LB +0.8 N.D. N.D. N.D. -0.3
rhizosphere rhizosphere sample 3; outgrowth in LB +0.8 N.D. N.D. N.D. -0.3
carbon source Heptanoic (C) +1.0 N.D. N.D. N.D. -0.4
root root EcoFAB sample 1; outgrowth in LB +1.2 N.D. N.D. N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.4 N.D. N.D. N.D. -0.4
soil soil sample 9; outgrowth in LB +1.0 N.D. N.D. N.D. +0.1
rhizosphere rhizosphere sample 5; outgrowth in LB +0.7 N.D. N.D. N.D. +0.5
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +1.4 N.D. N.D. N.D. -0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.8 N.D. N.D. N.D. -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.2 N.D. N.D. N.D. -0.4
root root sample 5; outgrowth in LB +1.6 N.D. N.D. N.D. +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.4 N.D. N.D. N.D. -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.6 N.D. N.D. N.D. -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.8 N.D. N.D. N.D. -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +2.2 N.D. N.D. N.D. +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +3.3 N.D. N.D. N.D. -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +3.1 N.D. N.D. N.D. +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +3.3 N.D. N.D. N.D. +0.0
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ABZR87_RS00390
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ABZR87_RS00395
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