Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS00380 and ABZR87_RS00385 are separated by 402 nucleotidesABZR87_RS00385 and ABZR87_RS00390 are separated by 66 nucleotidesABZR87_RS00390 and ABZR87_RS00395 are separated by 220 nucleotidesABZR87_RS00395 and ABZR87_RS00400 are separated by 109 nucleotides ABZR87_RS00380: ABZR87_RS00380 - phosphoribosylglycinamide formyltransferase, at 77,484 to 78,134 _RS00380 ABZR87_RS00385: ABZR87_RS00385 - response regulator transcription factor, at 78,537 to 79,202 _RS00385 ABZR87_RS00390: ABZR87_RS00390 - hybrid sensor histidine kinase/response regulator, at 79,269 to 81,101 _RS00390 ABZR87_RS00395: ABZR87_RS00395 - bifunctional riboflavin kinase/FAD synthetase, at 81,322 to 82,320 _RS00395 ABZR87_RS00400: ABZR87_RS00400 - isoleucine--tRNA ligase, at 82,430 to 85,309 _RS00400
Group Condition ABZR87_RS00380 ABZR87_RS00385 ABZR87_RS00390 ABZR87_RS00395 ABZR87_RS00400
phage Ra3_0.1 N.D. -3.6 -3.9 N.D. N.D.
phage Ra1_0.01 N.D. -3.5 -3.6 N.D. N.D.
phage Ra3_1 N.D. -2.6 -4.2 N.D. N.D.
phage Ra1_0.1 N.D. -1.9 -3.9 N.D. N.D.
phage Ra3_0.01 N.D. -2.7 -2.1 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) N.D. -3.5 -1.2 N.D. N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. -2.4 -1.0 N.D. N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-1 N.D. -1.7 -0.6 N.D. N.D.
micoeukaryotes C.elegans, mixed culture-1 N.D. -1.5 -0.5 N.D. N.D.
rhizosphere rhizosphere sample 5; outgrowth in LB N.D. +1.3 +0.7 N.D. N.D.
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. +1.9 +0.3 N.D. N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. +0.8 +1.4 N.D. N.D.
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. +1.4 +0.9 N.D. N.D.
soil soil sample 9; outgrowth in LB N.D. +1.4 +1.0 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +1.1 +1.4 N.D. N.D.
carbon source Heptanoic (C) N.D. +1.5 +1.0 N.D. N.D.
soil soil sample 3; outgrowth in LB N.D. +1.9 +0.6 N.D. N.D.
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. +2.1 +0.5 N.D. N.D.
root root EcoFAB sample 1; outgrowth in LB N.D. +1.7 +1.2 N.D. N.D.
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. +3.0 +0.8 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +1.8 +2.4 N.D. N.D.
root root sample 5; outgrowth in LB N.D. +3.0 +1.6 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +2.5 +2.2 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +3.1 +2.2 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +2.8 +2.8 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +2.6 +3.3 N.D. N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +4.4 +1.8 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +3.8 +3.1 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +5.1 +3.3 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +5.9 +2.6 N.D. N.D.
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