Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS00370 and ABZR87_RS00375 overlap by 4 nucleotidesABZR87_RS00375 and ABZR87_RS00380 overlap by 4 nucleotidesABZR87_RS00380 and ABZR87_RS00385 are separated by 402 nucleotidesABZR87_RS00385 and ABZR87_RS00390 are separated by 66 nucleotides ABZR87_RS00370: ABZR87_RS00370 - phospholipase D family protein, at 75,527 to 76,096 _RS00370 ABZR87_RS00375: ABZR87_RS00375 - RsmB/NOP family class I SAM-dependent RNA methyltransferase, at 76,093 to 77,487 _RS00375 ABZR87_RS00380: ABZR87_RS00380 - phosphoribosylglycinamide formyltransferase, at 77,484 to 78,134 _RS00380 ABZR87_RS00385: ABZR87_RS00385 - response regulator transcription factor, at 78,537 to 79,202 _RS00385 ABZR87_RS00390: ABZR87_RS00390 - hybrid sensor histidine kinase/response regulator, at 79,269 to 81,101 _RS00390
Group Condition ABZR87_RS00370 ABZR87_RS00375 ABZR87_RS00380 ABZR87_RS00385 ABZR87_RS00390
phage Ra3_0.1 -0.3 -0.1 N.D. -3.6 -3.9
phage Ra1_0.01 -0.2 -0.1 N.D. -3.5 -3.6
phage Ra3_1 -0.1 +0.1 N.D. -2.6 -4.2
phage Ra1_0.1 -0.1 -0.1 N.D. -1.9 -3.9
phage Ra3_0.01 +0.1 +0.2 N.D. -2.7 -2.1
carbon source 4-Hydroxybenzoic Acid (C) -0.1 +0.4 N.D. -3.5 -1.2
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.3 -0.6 N.D. -2.4 -1.0
micoeukaryotes C.elegans, mixed culture-1 -0.3 -0.6 N.D. -1.5 -0.5
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.0 -0.4 N.D. -1.7 -0.6
rhizosphere rhizosphere sample 3; outgrowth in LB +0.5 -0.5 N.D. -1.1 +0.8
carbon source Octanoic (C) +0.3 +0.9 N.D. -1.1 +0.4
carbon source Heptanoic (C) -0.6 +0.5 N.D. +0.8 +0.8
rhizosphere rhizosphere sample 4; outgrowth in LB +0.1 -0.4 N.D. +2.1 +0.5
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.0 +0.4 N.D. +1.4 +0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.1 N.D. +1.1 +1.4
soil soil sample 3; outgrowth in LB -0.1 +0.2 N.D. +1.9 +0.6
carbon source Octanoic (C) +0.5 +1.4 N.D. +1.6 -0.4
root root EcoFAB sample 1; outgrowth in LB +0.4 -0.3 N.D. +1.7 +1.2
carbon source Heptanoic (C) +0.0 +0.7 N.D. +1.5 +1.0
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.1 +0.1 N.D. +3.0 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.3 N.D. +1.8 +2.4
root root sample 5; outgrowth in LB +0.0 -0.4 N.D. +3.0 +1.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.1 N.D. +2.5 +2.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.1 N.D. +3.1 +2.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.1 N.D. +4.4 +1.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.1 N.D. +2.6 +3.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.4 N.D. +2.8 +2.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.0 N.D. +3.8 +3.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 -0.3 N.D. +5.9 +2.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.6 N.D. +5.1 +3.3
remove
ABZR87_RS00370
plot		 remove
ABZR87_RS00375
plot		 remove
ABZR87_RS00380		 remove
ABZR87_RS00385
plot		 remove
ABZR87_RS00390
plot