Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS00365 and ABZR87_RS00370 are separated by 25 nucleotidesABZR87_RS00370 and ABZR87_RS00375 overlap by 4 nucleotidesABZR87_RS00375 and ABZR87_RS00380 overlap by 4 nucleotidesABZR87_RS00380 and ABZR87_RS00385 are separated by 402 nucleotides ABZR87_RS00365: ABZR87_RS00365 - mechanosensitive ion channel domain-containing protein, at 74,125 to 75,501 _RS00365 ABZR87_RS00370: ABZR87_RS00370 - phospholipase D family protein, at 75,527 to 76,096 _RS00370 ABZR87_RS00375: ABZR87_RS00375 - RsmB/NOP family class I SAM-dependent RNA methyltransferase, at 76,093 to 77,487 _RS00375 ABZR87_RS00380: ABZR87_RS00380 - phosphoribosylglycinamide formyltransferase, at 77,484 to 78,134 _RS00380 ABZR87_RS00385: ABZR87_RS00385 - response regulator transcription factor, at 78,537 to 79,202 _RS00385
Group Condition ABZR87_RS00365 ABZR87_RS00370 ABZR87_RS00375 ABZR87_RS00380 ABZR87_RS00385
phage Ra3_0.1 -0.1 -0.3 -0.1 N.D. -3.6
phage Ra1_0.01 -0.2 -0.2 -0.1 N.D. -3.5
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.2 -0.3 -0.6 N.D. -2.4
carbon source 4-Hydroxybenzoic Acid (C) +0.1 -0.1 +0.4 N.D. -3.5
phage Ra3_1 -0.2 -0.1 +0.1 N.D. -2.6
micoeukaryotes C.elegans, mixed culture-1 -0.1 -0.3 -0.6 N.D. -1.5
phage Ra3_0.01 -0.0 +0.1 +0.2 N.D. -2.7
phage Ra1_0.1 -0.1 -0.1 -0.1 N.D. -1.9
carbon source Sebacic (C) -0.3 -0.2 +0.1 N.D. -1.8
micoeukaryotes Acanthamoeba sp., muxed culture-1 +0.1 -0.0 -0.4 N.D. -1.7
rhizosphere rhizosphere sample 3; outgrowth in LB +0.1 +0.5 -0.5 N.D. -1.1
carbon source Octanoic (C) +0.0 +0.3 +0.9 N.D. -1.1
root root sample 6; outgrowth in LB +0.7 -0.6 +0.4 N.D. +1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.0 -0.3 N.D. +1.8
rhizosphere rhizosphere sample 4; outgrowth in LB -0.0 +0.1 -0.4 N.D. +2.1
root root EcoFAB sample 1; outgrowth in LB +0.0 +0.4 -0.3 N.D. +1.7
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.3 +0.1 -0.0 N.D. +1.9
soil soil sample 3; outgrowth in LB +0.1 -0.1 +0.2 N.D. +1.9
carbon source Heptanoic (C) +0.2 +0.0 +0.7 N.D. +1.5
root root sample 5; outgrowth in LB -0.0 +0.0 -0.4 N.D. +3.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.2 +0.1 N.D. +2.5
carbon source Octanoic (C) -0.6 +0.5 +1.4 N.D. +1.6
no_plant_soil no_plant_soil sample 2; outgrowth in LB +0.2 -0.1 +0.1 N.D. +3.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.4 -0.1 N.D. +2.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.1 +0.1 N.D. +3.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.4 +0.4 N.D. +2.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.2 -0.0 N.D. +3.8
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.1 -0.1 N.D. +4.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.3 +0.6 N.D. +5.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.5 -0.3 N.D. +5.9
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ABZR87_RS00370
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