Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS00295 and ABZR87_RS00300 are separated by 16 nucleotidesABZR87_RS00300 and ABZR87_RS00305 are separated by 13 nucleotidesABZR87_RS00305 and ABZR87_RS00310 are separated by 13 nucleotidesABZR87_RS00310 and ABZR87_RS00315 are separated by 210 nucleotides ABZR87_RS00295: ABZR87_RS00295 - ABC transporter ATP-binding protein, at 60,206 to 60,922 _RS00295 ABZR87_RS00300: ABZR87_RS00300 - ABC transporter ATP-binding protein, at 60,939 to 61,715 _RS00300 ABZR87_RS00305: ABZR87_RS00305 - ABC transporter ATP-binding protein, at 61,729 to 62,856 _RS00305 ABZR87_RS00310: ABZR87_RS00310 - branched-chain amino acid ABC transporter permease, at 62,870 to 63,805 _RS00310 ABZR87_RS00315: ABZR87_RS00315 - branched-chain amino acid ABC transporter substrate-binding protein, at 64,016 to 65,224 _RS00315
Group Condition ABZR87_RS00295 ABZR87_RS00300 ABZR87_RS00305 ABZR87_RS00310 ABZR87_RS00315
carbon source Beta-alanine (C) -4.5 -3.7 -3.7 -3.9 -3.8
carbon source Beta-alanine (C) -3.4 -3.2 -3.8 -3.3 -3.2
soil soil EcoFAB sample 1; outgrowth in LB -1.0 -2.4 -2.5 -2.2 -2.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.7 -2.5 -2.0 -1.4 -2.0
root root sample 5; outgrowth in LB -2.5 -1.7 -1.9 -1.0 -1.4
root root EcoFAB sample 1; outgrowth in LB -2.2 -1.3 -1.2 -1.2 -1.2
soil soil EcoFAB sample 2; outgrowth in LB -1.0 -1.8 -1.4 -1.1 -1.3
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -1.4 -1.5 -1.1 -1.2 -1.1
root root EcoFAB sample 2; outgrowth in LB -0.5 -1.2 -0.7 -1.6 -1.0
no_plant_soil no_plant_soil sample 3; outgrowth in LB -1.9 -0.6 -0.7 -0.6 -0.7
root root sample 6; outgrowth in LB -0.6 -0.6 -1.2 -1.1 -1.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -1.1 -0.4 -1.0 -1.1 -0.7
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -1.1 -0.6 -1.1 -0.7 -0.9
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.1 -0.8 -1.2 -1.1 -1.0
root root sample 4; outgrowth in LB -1.4 -0.7 -0.8 -0.9 -0.4
rhizosphere rhizosphere sample 5; outgrowth in LB -1.4 -0.7 -0.7 -0.4 -0.7
no_plant_soil no_plant_soil sample 2; outgrowth in LB -1.1 -0.6 -0.7 -0.5 -0.5
rhizosphere rhizosphere sample 2; outgrowth in LB -1.6 -0.4 -0.6 -0.3 -0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.3 -1.3 -0.3 +0.2 -0.4
carbon source propionate (C) -0.6 -0.5 -0.6 -0.7 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 -0.5 -0.7 -0.2 -0.4
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.8 -0.5 -0.6 -0.5 -0.3
rhizosphere rhizosphere sample 4; outgrowth in LB -0.2 -0.4 -0.7 -0.8 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 -0.6 -0.4 -0.5 -0.3
carbon source propionate (C) -0.3 -0.7 -0.6 -0.4 -0.7
rhizosphere rhizosphere sample 7; outgrowth in LB -0.2 -0.7 -0.7 -0.5 -0.6
rhizosphere rhizosphere sample 8; outgrowth in LB -0.2 -0.4 -0.6 -0.6 -0.6
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 -0.3 -0.6 -0.6 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.4 -0.8 +0.4 -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 -0.4 -0.6 -0.4 -0.3
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ABZR87_RS00295
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ABZR87_RS00300
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ABZR87_RS00310
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ABZR87_RS00315
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