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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS00280 and ABZR87_RS00285 are separated by 271 nucleotides
ABZR87_RS00285 and ABZR87_RS00290 are separated by 79 nucleotides
ABZR87_RS00290 and ABZR87_RS00295 are separated by 66 nucleotides
ABZR87_RS00295 and ABZR87_RS00300 are separated by 16 nucleotides
ABZR87_RS00280: ABZR87_RS00280 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 57,075 to 58,124
_RS00280
ABZR87_RS00285: ABZR87_RS00285 - acetylornithine transaminase, at 58,396 to 59,583
_RS00285
ABZR87_RS00290: ABZR87_RS00290 - GNAT family N-acetyltransferase, at 59,663 to 60,139
_RS00290
ABZR87_RS00295: ABZR87_RS00295 - ABC transporter ATP-binding protein, at 60,206 to 60,922
_RS00295
ABZR87_RS00300: ABZR87_RS00300 - ABC transporter ATP-binding protein, at 60,939 to 61,715
_RS00300
Group
Condition
ABZR87
_RS00280
ABZR87
_RS00285
ABZR87
_RS00290
ABZR87
_RS00295
ABZR87
_RS00300
carbon source
Beta-alanine (C)
-0.0
-2.9
+0.1
-4.5
-3.7
carbon source
Beta-alanine (C)
-0.1
-2.9
+0.1
-3.4
-3.2
carbon source
Sebacic (C)
-1.1
-4.0
+0.2
-1.4
-0.2
carbon source
Octanoic (C)
-2.4
-3.6
+0.1
-0.5
+0.2
carbon source
Lauric (C)
-0.9
-4.5
+0.1
-0.4
-0.2
carbon source
adipate (C)
-0.6
-4.4
-0.1
-0.3
-0.2
carbon source
propionate (C)
-1.1
-3.9
+0.3
-0.2
-0.4
nitrogen source
nitrogen source nitrate 20mM
-0.0
-5.2
+0.1
-0.3
+0.0
carbon source
Dodecandioic (C)
-1.1
-4.2
-0.0
-0.2
+0.1
carbon source
butyrate (C)
+0.0
-4.4
+0.2
-0.6
-0.5
nitrogen source
nitrogen source nitrite 0.5mM
-0.1
-5.0
+0.3
-0.6
+0.0
carbon source
succinate (C)
-0.6
-4.6
+0.1
-0.1
+0.0
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.0
-5.3
+0.1
-0.0
+0.1
carbon source
Heptanoic (C)
-1.8
-3.8
+0.0
+0.1
+0.4
carbon source
propionate (C)
-0.8
-4.4
+0.2
-0.0
+0.0
carbon source
D-Glucose (C)
-0.2
-4.5
+0.1
-0.4
-0.0
carbon source
Heptanoic (C)
-2.0
-3.6
+0.2
+0.3
+0.2
nitrogen source
nitrogen source nitrate 20mM
-0.2
-5.3
+0.1
+0.4
+0.1
carbon source
Dodecandioic (C)
-1.4
-3.8
+0.2
-0.0
+0.1
nitrogen source
nitrogen source nitrite 0.5mM
-0.3
-5.1
+0.2
+0.3
+0.1
nitrogen source
nitrogen source nitrite 5mM
+0.0
-5.4
+0.3
+0.3
-0.1
nitrogen source
nitrogen source nitrate 5mM
-0.0
-5.3
+0.3
+0.4
-0.1
carbon source
butyrate (C)
+0.2
-4.5
+0.2
-0.4
-0.2
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.1
-5.4
+0.1
+0.4
+0.1
nitrogen source
nitrogen source nitrate 5mM
+0.0
-5.1
+0.4
+0.5
-0.3
carbon source
Sebacic (C)
-0.8
-3.9
+0.2
-0.1
+0.1
carbon source
Octanoic (C)
-2.4
-3.5
+0.4
+1.0
+0.1
carbon source
adipate (C)
-0.4
-4.4
+0.1
+0.3
+0.1
carbon source
Pimelic (C)
+0.1
-4.4
+0.2
+0.4
+0.0
root
root sample 5; outgrowth in LB
-0.4
+1.5
+0.0
-2.5
-1.7
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