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Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS00250 and ABZR87_RS00255 overlap by 4 nucleotides
ABZR87_RS00255 and ABZR87_RS00260 are separated by 243 nucleotides
ABZR87_RS00260 and ABZR87_RS00265 are separated by 4 nucleotides
ABZR87_RS00265 and ABZR87_RS00270 are separated by 9 nucleotides
ABZR87_RS00250: ABZR87_RS00250 - MFS transporter, at 49,672 to 50,874
_RS00250
ABZR87_RS00255: ABZR87_RS00255 - TIGR03571 family LLM class oxidoreductase, at 50,871 to 51,815
_RS00255
ABZR87_RS00260: ABZR87_RS00260 - MarR family winged helix-turn-helix transcriptional regulator, at 52,059 to 52,496
_RS00260
ABZR87_RS00265: ABZR87_RS00265 - chloride channel protein, at 52,501 to 54,318
_RS00265
ABZR87_RS00270: ABZR87_RS00270 - sensor domain-containing diguanylate cyclase, at 54,328 to 55,992
_RS00270
Group
Condition
ABZR87
_RS00250
ABZR87
_RS00255
ABZR87
_RS00260
ABZR87
_RS00265
ABZR87
_RS00270
carbon source
Octanoic (C)
+0.2
-1.5
-1.1
-0.3
-0.2
rhizosphere
rhizosphere EcoFAB sample 1; outgrowth in LB
-0.3
+0.3
-1.6
-0.5
+0.1
soil
soil EcoFAB sample 1; outgrowth in LB
-0.6
+0.3
-1.2
-0.4
+0.0
carbon source
Sebacic (C)
-0.0
+0.2
-1.5
+0.1
-0.3
carbon source
Octanoic (C)
-0.2
+0.3
-1.1
+0.1
-0.7
root
root EcoFAB sample 1; outgrowth in LB
-0.2
+0.2
-0.5
-0.4
+0.2
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.2
-1.2
-0.0
+0.5
+0.1
no plant control
Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
+0.1
+0.2
-0.6
-0.6
+0.1
carbon source
Heptanoic (C)
+0.0
-0.4
-0.5
+0.3
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.4
-0.9
-0.0
+0.0
-0.1
root
root sample 5; outgrowth in LB
-0.2
-0.6
-0.2
+0.4
+0.0
soil
soil sample 1; outgrowth in LB
-0.2
+0.4
-0.4
-0.0
+0.2
rhizosphere
rhizosphere sample 3; outgrowth in LB
-0.2
-0.5
+0.3
+0.2
+0.3
carbon source
Dodecandioic (C)
+0.3
+0.3
-0.4
+0.4
-0.0
rhizosphere
rhizosphere sample 8; outgrowth in LB
-0.3
-0.4
+0.2
+0.8
+0.2
soil
soil sample 8; outgrowth in LB
-0.0
-0.4
+0.4
+0.5
+0.1
no_plant_rhizosphere
no_plant_rhizosphere sample 3; outgrowth in LB
-0.3
+0.3
+0.5
+0.1
-0.1
no_plant_soil
no_plant_soil sample 2; outgrowth in LB
-0.2
-0.4
+0.6
+0.6
+0.1
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
+0.4
-0.4
+0.4
+0.0
+0.2
carbon source
propionate (C)
+0.2
+0.4
-0.2
+0.3
+0.2
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
+0.2
+0.3
+0.6
-0.2
+0.0
nitrogen source
nitrogen source nitrate 5mM
+0.4
+0.6
+0.3
+0.1
-0.3
carbon source
succinate (C)
+0.0
+0.5
+0.3
+0.4
+0.1
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.2
+0.4
+0.7
+0.4
+0.2
soil
soil sample 9; outgrowth in LB
-0.1
-0.4
+0.9
+1.3
+0.1
root
root sample 4; outgrowth in LB
-0.3
+0.1
+0.9
+1.1
-0.0
rhizosphere
rhizosphere sample 9; outgrowth in LB
-0.2
+0.1
+0.8
+1.3
-0.0
soil
soil sample 4; outgrowth in LB
+0.1
-0.2
+1.1
+1.5
-0.0
no_plant_soil
no_plant_soil sample 1; outgrowth in LB
+0.1
+0.1
+1.2
+1.2
+0.2
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.2
-0.0
+3.1
-0.2
+0.2
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