Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS00250 and ABZR87_RS00255 overlap by 4 nucleotidesABZR87_RS00255 and ABZR87_RS00260 are separated by 243 nucleotidesABZR87_RS00260 and ABZR87_RS00265 are separated by 4 nucleotidesABZR87_RS00265 and ABZR87_RS00270 are separated by 9 nucleotides ABZR87_RS00250: ABZR87_RS00250 - MFS transporter, at 49,672 to 50,874 _RS00250 ABZR87_RS00255: ABZR87_RS00255 - TIGR03571 family LLM class oxidoreductase, at 50,871 to 51,815 _RS00255 ABZR87_RS00260: ABZR87_RS00260 - MarR family winged helix-turn-helix transcriptional regulator, at 52,059 to 52,496 _RS00260 ABZR87_RS00265: ABZR87_RS00265 - chloride channel protein, at 52,501 to 54,318 _RS00265 ABZR87_RS00270: ABZR87_RS00270 - sensor domain-containing diguanylate cyclase, at 54,328 to 55,992 _RS00270
Group Condition ABZR87_RS00250 ABZR87_RS00255 ABZR87_RS00260 ABZR87_RS00265 ABZR87_RS00270
carbon source Octanoic (C) +0.2 -1.5 -1.1 -0.3 -0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.3 +0.3 -1.6 -0.5 +0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.6 +0.3 -1.2 -0.4 +0.0
carbon source Sebacic (C) -0.0 +0.2 -1.5 +0.1 -0.3
carbon source Octanoic (C) -0.2 +0.3 -1.1 +0.1 -0.7
root root EcoFAB sample 1; outgrowth in LB -0.2 +0.2 -0.5 -0.4 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -1.2 -0.0 +0.5 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.2 -0.6 -0.6 +0.1
carbon source Heptanoic (C) +0.0 -0.4 -0.5 +0.3 -0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.4 -0.9 -0.0 +0.0 -0.1
root root sample 5; outgrowth in LB -0.2 -0.6 -0.2 +0.4 +0.0
soil soil sample 1; outgrowth in LB -0.2 +0.4 -0.4 -0.0 +0.2
rhizosphere rhizosphere sample 3; outgrowth in LB -0.2 -0.5 +0.3 +0.2 +0.3
carbon source Dodecandioic (C) +0.3 +0.3 -0.4 +0.4 -0.0
rhizosphere rhizosphere sample 8; outgrowth in LB -0.3 -0.4 +0.2 +0.8 +0.2
soil soil sample 8; outgrowth in LB -0.0 -0.4 +0.4 +0.5 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.3 +0.3 +0.5 +0.1 -0.1
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.2 -0.4 +0.6 +0.6 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.4 +0.4 +0.0 +0.2
carbon source propionate (C) +0.2 +0.4 -0.2 +0.3 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.3 +0.6 -0.2 +0.0
nitrogen source nitrogen source nitrate 5mM +0.4 +0.6 +0.3 +0.1 -0.3
carbon source succinate (C) +0.0 +0.5 +0.3 +0.4 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.4 +0.7 +0.4 +0.2
soil soil sample 9; outgrowth in LB -0.1 -0.4 +0.9 +1.3 +0.1
root root sample 4; outgrowth in LB -0.3 +0.1 +0.9 +1.1 -0.0
rhizosphere rhizosphere sample 9; outgrowth in LB -0.2 +0.1 +0.8 +1.3 -0.0
soil soil sample 4; outgrowth in LB +0.1 -0.2 +1.1 +1.5 -0.0
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.1 +0.1 +1.2 +1.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.0 +3.1 -0.2 +0.2
remove
ABZR87_RS00250
plot
remove
ABZR87_RS00255
plot
remove
ABZR87_RS00260
remove
ABZR87_RS00265
plot
remove
ABZR87_RS00270
plot