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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS00205 and ABZR87_RS00210 are separated by 17 nucleotides
ABZR87_RS00210 and ABZR87_RS00215 are separated by 125 nucleotides
ABZR87_RS00215 and ABZR87_RS00220 are separated by 153 nucleotides
ABZR87_RS00220 and ABZR87_RS00225 are separated by 41 nucleotides
ABZR87_RS00205: ABZR87_RS00205 - DUF934 domain-containing protein, at 40,209 to 40,754
_RS00205
ABZR87_RS00210: ABZR87_RS00210 - nitrite/sulfite reductase, at 40,772 to 42,433
_RS00210
ABZR87_RS00215: ABZR87_RS00215 - sulfite exporter TauE/SafE family protein, at 42,559 to 43,332
_RS00215
ABZR87_RS00220: ABZR87_RS00220 - CysB family HTH-type transcriptional regulator, at 43,486 to 44,427
_RS00220
ABZR87_RS00225: ABZR87_RS00225 - ABC transporter substrate-binding protein, at 44,469 to 45,638
_RS00225
Group
Condition
ABZR87
_RS00205
ABZR87
_RS00210
ABZR87
_RS00215
ABZR87
_RS00220
ABZR87
_RS00225
carbon source
Heptanoic (C)
-6.9
-5.3
-2.6
-4.9
+0.1
carbon source
Heptanoic (C)
-6.6
-4.1
-2.9
-5.1
+0.1
carbon source
Lauric (C)
-5.5
-5.9
-2.2
-4.8
+0.1
carbon source
Sebacic (C)
-6.2
-4.6
-2.9
-3.9
-0.1
carbon source
Octanoic (C)
-4.2
-4.1
-3.0
-5.0
-0.0
carbon source
4-Hydroxybenzoic Acid (C)
-4.3
-5.2
-2.7
-4.1
+0.2
carbon source
Octanoic (C)
-4.1
-4.4
-2.7
-4.4
-0.3
carbon source
Dodecandioic (C)
-5.3
-4.6
-2.1
-3.8
-0.0
carbon source
Azelaic (C)
-4.7
-4.6
-1.9
-4.1
+0.0
carbon source
Sebacic (C)
-3.9
-4.7
-1.7
-4.9
+0.0
nitrogen source
nitrogen source nitrate 20mM
-4.1
-5.8
-2.0
-3.3
+0.1
carbon source
Protocatechuic Acid (C)
-3.8
-5.6
-1.8
-3.8
+0.1
nitrogen source
nitrogen source nitrate 5mM
-3.4
-5.2
-2.0
-3.9
-0.0
carbon source
Dodecandioic (C)
-4.2
-3.9
-2.1
-4.1
+0.0
carbon source
Glycerol (C)
-4.5
-5.7
-1.8
-2.4
+0.0
nitrogen source
nitrogen source Ammonium chloride 20mM
-4.3
-5.1
-1.9
-3.0
+0.2
carbon source
D-Glucose (C)
-4.2
-4.8
-1.6
-3.5
+0.1
carbon source
Trans-2-methyl-2-butenoic (C)
-3.4
-5.1
-2.2
-3.0
-0.0
carbon source
D-Galactose (C)
-3.6
-5.1
-1.5
-3.5
-0.1
carbon source
Valeric (C)
-5.8
-3.7
-1.5
-2.7
+0.2
carbon source
D-Glucose (C)
-2.7
-5.7
-1.8
-3.6
+0.1
nitrogen source
nitrogen source Ammonium chloride 20mM
-3.7
-4.8
-2.1
-2.8
-0.1
carbon source
Hexanoic (C)
-3.4
-4.9
-1.3
-3.8
-0.1
carbon source
3-Hydroxypropionate (C)
-3.5
-5.0
-1.6
-3.1
+0.0
carbon source
Beta-alanine (C)
-2.6
-4.9
-1.8
-3.9
+0.1
carbon source
Pimelic (C)
-3.5
-4.9
-1.5
-3.3
+0.1
carbon source
Trans-2-methyl-2-butenoic (C)
-2.7
-4.6
-2.1
-3.8
+0.2
carbon source
Pimelic (C)
-2.5
-5.4
-1.6
-3.3
-0.2
carbon source
D-Glucose (C)
-3.1
-4.4
-1.7
-3.7
+0.0
carbon source
D-Glucose (C)
-3.5
-4.4
-1.6
-3.4
+0.1
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