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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS00165 and ABZR87_RS00170 overlap by 4 nucleotides
ABZR87_RS00170 and ABZR87_RS00175 are separated by 29 nucleotides
ABZR87_RS00175 and ABZR87_RS00180 are separated by 125 nucleotides
ABZR87_RS00180 and ABZR87_RS00185 are separated by 15 nucleotides
ABZR87_RS00165: ABZR87_RS00165 - CbiX/SirB N-terminal domain-containing protein, at 33,373 to 33,744
_RS00165
ABZR87_RS00170: ABZR87_RS00170 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 33,741 to 34,157
_RS00170
ABZR87_RS00175: ABZR87_RS00175 - LysR family transcriptional regulator, at 34,187 to 35,083
_RS00175
ABZR87_RS00180: ABZR87_RS00180 - NAD(P)-dependent alcohol dehydrogenase, at 35,209 to 36,225
_RS00180
ABZR87_RS00185: ABZR87_RS00185 - uroporphyrinogen-III C-methyltransferase, at 36,241 to 37,047
_RS00185
Group
Condition
ABZR87
_RS00165
ABZR87
_RS00170
ABZR87
_RS00175
ABZR87
_RS00180
ABZR87
_RS00185
carbon source
Sebacic (C)
N.D.
-0.3
-1.1
-0.2
-3.8
carbon source
Carbon source D-Glucose 10 mM
N.D.
+0.1
-0.2
+0.0
-4.8
nitrogen source
nitrogen source Ammonium chloride 20mM
N.D.
+0.4
+0.1
+0.2
-5.6
carbon source
Suberic (C)
N.D.
+0.5
-0.7
-0.0
-4.7
carbon source
Protocatechuic Acid (C)
N.D.
+0.2
-0.5
+0.0
-4.6
carbon source
3-Hydroxypropionate (C)
N.D.
+0.0
+0.2
+0.1
-5.0
nitrogen source
nitrogen source nitrate 20mM
N.D.
-0.3
+0.2
-0.2
-4.4
nitrogen source
nitrogen source nitrate 20mM
N.D.
+0.2
+0.3
+0.4
-5.5
carbon source
Azelaic (C)
N.D.
+0.3
-0.5
-0.1
-4.3
carbon source
Trans-2-methyl-2-butenoic (C)
N.D.
+0.0
+0.2
-0.2
-4.7
carbon source
4-Hydroxybenzoic Acid (C)
N.D.
-0.5
+0.3
+0.1
-4.5
carbon source
Protocatechuic Acid (C)
N.D.
+0.3
+0.1
+0.1
-5.0
carbon source
Heptanoic (C)
N.D.
+0.1
-0.5
-0.1
-4.0
nitrogen source
nitrogen source nitrate 5mM
N.D.
+0.3
+0.3
+0.1
-5.2
carbon source
D-Glucose (C)
N.D.
+0.1
+0.2
+0.4
-5.1
carbon source
Glycerol (C)
N.D.
+0.3
+0.3
+0.1
-5.1
carbon source
Heptanoic (C)
N.D.
+0.2
-0.1
+0.2
-4.6
carbon source
Glycerol (C)
N.D.
+0.4
-0.0
+0.1
-4.7
carbon source
D-Glucose (C)
N.D.
+0.1
-0.2
+0.5
-4.6
nitrogen source
nitrogen source nitrite 1mM
N.D.
+0.1
+0.2
-0.6
-3.9
carbon source
Carbon source D-Glucose 10 mM
N.D.
+0.3
-0.1
+0.1
-4.3
carbon source
Trans-2-methyl-2-butenoic (C)
N.D.
+0.1
+0.4
+0.2
-4.8
carbon source
Hexanoic (C)
N.D.
+0.3
-0.0
-0.1
-4.2
nitrogen source
nitrogen source Ammonium chloride 20mM
N.D.
+0.2
+0.1
-0.0
-4.4
nitrogen source
nitrogen source nitrite 5mM
N.D.
-0.1
+0.3
+0.0
-4.2
carbon source
Pimelic (C)
N.D.
+0.5
-0.1
+0.0
-4.3
carbon source
Lauric (C)
N.D.
+0.3
+0.0
+0.2
-4.4
carbon source
Protocatechuic Acid (C)
N.D.
+0.0
+0.4
+0.2
-4.4
carbon source
Pimelic (C)
N.D.
+0.4
+0.3
+0.3
-4.4
nitrogen source
nitrogen source nitrite 0.5mM
N.D.
+0.2
+0.5
-0.2
-3.7
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