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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS00010 and ABZR87_RS00015 are separated by 2 nucleotides
ABZR87_RS00015 and ABZR87_RS00020 are separated by 237 nucleotides
ABZR87_RS00020 and ABZR87_RS00025 are separated by 39 nucleotides
ABZR87_RS00025 and ABZR87_RS00030 are separated by 39 nucleotides
ABZR87_RS00010: ABZR87_RS00010 - translocation/assembly module TamB domain-containing protein, at 1,162 to 5,076
_RS00010
ABZR87_RS00015: ABZR87_RS00015 - autotransporter assembly complex family protein, at 5,079 to 6,866
_RS00015
ABZR87_RS00020: ABZR87_RS00020 - DUF3460 family protein, at 7,104 to 7,292
_RS00020
ABZR87_RS00025: ABZR87_RS00025 - ScpA family protein, at 7,332 to 8,213
_RS00025
ABZR87_RS00030: ABZR87_RS00030 - pantoate--beta-alanine ligase, at 8,253 to 9,104
_RS00030
Group
Condition
ABZR87
_RS00010
ABZR87
_RS00015
ABZR87
_RS00020
ABZR87
_RS00025
ABZR87
_RS00030
carbon source
D-Xylose (C)
-0.1
-0.2
-1.0
N.D.
N.D.
soil
soil sample 5; outgrowth in LB
-0.0
+0.1
-1.2
N.D.
N.D.
carbon source
D-Galactose (C)
+0.2
+0.2
-1.1
N.D.
N.D.
nitrogen source
nitrogen source nitrite 5mM
+0.3
+0.3
-0.9
N.D.
N.D.
root
root EcoFAB sample 1; outgrowth in LB
-0.5
-0.5
+0.9
N.D.
N.D.
carbon source
Sebacic (C)
+0.4
+0.5
-1.0
N.D.
N.D.
carbon source
Heptanoic (C)
+0.6
+0.4
-1.1
N.D.
N.D.
nitrogen source
nitrogen source nitrate 20mM
+0.4
+0.3
-0.6
N.D.
N.D.
rhizosphere
rhizosphere EcoFAB sample 1; outgrowth in LB
-0.7
-0.4
+1.2
N.D.
N.D.
soil
soil EcoFAB sample 1; outgrowth in LB
-0.5
-0.2
+0.9
N.D.
N.D.
carbon source
butyrate (C)
+0.5
+0.3
-0.5
N.D.
N.D.
carbon source
Hexanoic (C)
+0.6
+0.2
-0.4
N.D.
N.D.
carbon source
Heptanoic (C)
+0.5
+0.5
-0.4
N.D.
N.D.
carbon source
3-Hydroxypropionate (C)
+0.5
+0.6
-0.3
N.D.
N.D.
carbon source
Azelaic (C)
+0.6
+0.5
-0.3
N.D.
N.D.
carbon source
Sebacic (C)
+0.6
+0.5
-0.3
N.D.
N.D.
carbon source
butyrate (C)
+0.9
+0.6
-0.5
N.D.
N.D.
carbon source
propionate (C)
+0.8
+0.6
-0.3
N.D.
N.D.
carbon source
succinate (C)
+0.7
+0.5
-0.1
N.D.
N.D.
carbon source
Suberic (C)
+0.6
+0.4
+0.2
N.D.
N.D.
carbon source
D-Glucose (C)
+0.6
+0.4
+0.2
N.D.
N.D.
carbon source
Lauric (C)
+0.6
+0.5
+0.1
N.D.
N.D.
carbon source
Disodium Glutarate (C)
+0.3
+0.3
+0.6
N.D.
N.D.
carbon source
Dodecandioic (C)
+0.7
+0.4
+0.2
N.D.
N.D.
carbon source
propionate (C)
+0.6
+0.6
+0.2
N.D.
N.D.
carbon source
Dodecandioic (C)
+0.4
+0.4
+0.7
N.D.
N.D.
nitrogen source
nitrogen source nitrite 0.5mM
+0.2
+0.2
+1.1
N.D.
N.D.
carbon source
Octanoic (C)
+1.6
+1.2
-1.2
N.D.
N.D.
carbon source
Octanoic (C)
+1.3
+1.3
-0.8
N.D.
N.D.
carbon source
Lauric (C)
+1.2
+1.1
-0.3
N.D.
N.D.
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