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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS20480 and ABZR86_RS20485 overlap by 8 nucleotides
ABZR86_RS20485 and ABZR86_RS20490 overlap by 4 nucleotides
ABZR86_RS20490 and ABZR86_RS20495 are separated by 1 nucleotides
ABZR86_RS20495 and ABZR86_RS20500 overlap by 4 nucleotides
ABZR86_RS20480: ABZR86_RS20480 - (2Fe-2S)-binding protein, at 36,040 to 36,285
_RS20480
ABZR86_RS20485: ABZR86_RS20485 - FAD/NAD(P)-binding oxidoreductase, at 36,278 to 37,564
_RS20485
ABZR86_RS20490: ABZR86_RS20490 - dihydrodipicolinate synthase family protein, at 37,561 to 38,466
_RS20490
ABZR86_RS20495: ABZR86_RS20495 - aldehyde dehydrogenase family protein, at 38,468 to 40,069
_RS20495
ABZR86_RS20500: ABZR86_RS20500 - Xaa-Pro peptidase family protein, at 40,066 to 41,271
_RS20500
Group
Condition
ABZR86
_RS20480
ABZR86
_RS20485
ABZR86
_RS20490
ABZR86
_RS20495
ABZR86
_RS20500
lb
LB
N.D.
N.D.
-0.4
+0.4
-0.8
nitrogen source
N-Acetyl-D-glucosamine (N)
N.D.
N.D.
-0.1
+0.1
-0.5
lb
LB
N.D.
N.D.
-0.5
+0.4
-0.2
carbon source
D-Glucose (C)
N.D.
N.D.
-0.5
-0.0
+0.4
carbon source
D-Glucose (C)
N.D.
N.D.
-0.4
-0.2
+0.4
stress
Chlorite 0.32 mM
N.D.
N.D.
-0.4
+0.2
+0.3
nitrogen source
L-Lysine (N)
N.D.
N.D.
-0.4
+0.4
+0.1
nitrogen source
L-Leucine (N)
N.D.
N.D.
-0.3
+0.0
+0.4
stress
Carbenicillin 0.04 mg/ml
N.D.
N.D.
+0.2
-0.3
+0.2
stress
Tetracycline 0.012 mg/ml
N.D.
N.D.
+0.3
+0.1
-0.2
stress
Zinc 2.5 mM
N.D.
N.D.
+0.2
-0.3
+0.3
carbon source
L-Proline (C)
N.D.
N.D.
-0.4
+0.2
+0.5
stress
A22 0.02 mg/ml
N.D.
N.D.
+0.0
+0.5
-0.2
stress
Fusidic 0.4 mg/ml
N.D.
N.D.
-0.2
+0.2
+0.3
carbon source
D-Fructose (C)
N.D.
N.D.
+0.0
-0.1
+0.5
stress
D-Cycloserine 0.032 mg/ml
N.D.
N.D.
-0.1
+0.4
+0.2
stress
Spectinomycin 0.04 mg/ml
N.D.
N.D.
-0.3
+0.2
+0.6
stress
Chloride 250 mM
N.D.
N.D.
-0.3
+0.3
+0.7
carbon source
a-Cyclodextrin (C)
N.D.
N.D.
+0.2
+0.0
+0.5
nitrogen source
L-Proline (N)
N.D.
N.D.
+0.1
+0.3
+0.3
carbon source
L-Alanine (C)
N.D.
N.D.
+0.3
+0.0
+0.4
carbon source
NAG (C)
N.D.
N.D.
+0.2
+0.2
+0.3
stress
sodium fluoride 60 mM
N.D.
N.D.
-0.0
+0.3
+0.5
stress
Sisomicin 0.016 mg/ml
N.D.
N.D.
-0.0
+0.4
+0.4
carbon source
NAG (C)
N.D.
N.D.
+0.2
+0.2
+0.5
lb
LB
N.D.
N.D.
+0.4
+0.4
+0.2
nitrogen source
Casamino Acids (N)
N.D.
N.D.
-0.1
+0.3
+0.7
stress
Carbenicillin 0.02 mg/ml
N.D.
N.D.
+0.2
+0.4
+0.4
stress
Chloramphenicol 0.008 mg/ml
N.D.
N.D.
+0.4
+0.4
+0.3
nitrogen source
L-Asparagine (N)
N.D.
N.D.
+0.5
+0.7
+0.7
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