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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS17940 and ABZR86_RS17945 are separated by 122 nucleotides
ABZR86_RS17945 and ABZR86_RS17950 are separated by 98 nucleotides
ABZR86_RS17950 and ABZR86_RS17955 are separated by 169 nucleotides
ABZR86_RS17955 and ABZR86_RS17960 are separated by 535 nucleotides
ABZR86_RS17940: ABZR86_RS17940 - FUSC family protein, at 1,597 to 2,970
_RS17940
ABZR86_RS17945: ABZR86_RS17945 - aldo/keto reductase family oxidoreductase, at 3,093 to 3,959
_RS17945
ABZR86_RS17950: ABZR86_RS17950 - LysR family transcriptional regulator, at 4,058 to 4,960
_RS17950
ABZR86_RS17955: ABZR86_RS17955 - TonB-dependent receptor, at 5,130 to 7,748
_RS17955
ABZR86_RS17960: ABZR86_RS17960 - hypothetical protein, at 8,284 to 8,811
_RS17960
Group
Condition
ABZR86
_RS17940
ABZR86
_RS17945
ABZR86
_RS17950
ABZR86
_RS17955
ABZR86
_RS17960
lb
LB
-1.0
-0.4
-0.1
+0.0
-0.2
carbon source
NAG (C)
-0.2
-0.2
-0.4
-0.0
-0.5
carbon source
a-Cyclodextrin (C)
-0.3
-0.5
-0.1
-0.1
-0.3
stress
Fusidic 0.4 mg/ml
-0.4
-0.1
-0.1
-0.1
-0.5
carbon source
D-Cellobiose (C)
-0.7
-0.3
+0.2
-0.0
-0.3
carbon source
D-Fructose (C)
-0.5
-0.4
-0.1
-0.0
-0.0
carbon source
L-Proline (C)
-0.2
-0.4
-0.4
-0.0
+0.0
stress
sodium fluoride 40 mM
-0.6
-0.0
-0.2
-0.0
-0.0
nitrogen source
L-Proline (N)
-0.6
-0.3
+0.0
-0.1
+0.0
carbon source
pyruvate (C)
-0.5
-0.2
-0.1
-0.0
-0.0
carbon source
L-Alanine (C)
-0.3
-0.2
-0.3
-0.1
-0.1
carbon source
L-Proline (C)
-0.5
-0.1
-0.2
+0.1
-0.2
carbon source
L-Alanine (C)
-0.6
-0.2
+0.2
-0.0
-0.1
lb
LB
+0.1
-0.2
-0.5
-0.1
-0.0
stress
Zinc 2.5 mM
-0.5
+0.1
+0.2
-0.3
-0.2
stress
Dimethyl Sulfoxide 7.5 vol%
+0.2
-0.2
-0.4
+0.0
-0.2
lb
LB
-0.5
+0.2
-0.4
-0.0
+0.0
carbon source
D-Glucose (C)
-0.4
-0.1
-0.2
-0.1
+0.3
stress
Paraquat dichloride 0.2 mg/ml
+0.1
-0.3
+0.1
-0.1
-0.2
stress
perchlorate 75 mM
-0.1
-0.3
+0.3
-0.1
-0.1
nitrogen source
L-Lysine (N)
-0.8
+0.1
+0.2
+0.0
+0.1
nitrogen source
nitrate (N)
-0.5
-0.1
+0.1
+0.1
+0.3
stress
Chlorite 0.32 mM
+0.3
-0.1
-0.3
-0.0
+0.1
carbon source
D-Fructose (C)
-0.2
-0.2
+0.4
+0.1
+0.0
stress
Spectinomycin 0.04 mg/ml
+0.4
-0.3
+0.1
+0.0
-0.1
nitrogen source
N-Acetyl-D-glucosamine (N)
-0.1
+0.3
-0.1
-0.1
+0.2
stress
Nalidixic 0.08 mg/ml
-0.2
+0.3
-0.1
+0.0
+0.3
carbon source
pyruvate (C)
+0.4
-0.2
+0.3
-0.1
+0.0
carbon source
D-Maltose (C)
+0.8
-0.1
+0.1
-0.1
-0.1
nitrogen source
L-Asparagine (N)
+0.2
+0.2
+0.3
+0.1
+0.4
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