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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS17370 and ABZR86_RS17375 overlap by 4 nucleotides
ABZR86_RS17375 and ABZR86_RS17380 are separated by 87 nucleotides
ABZR86_RS17380 and ABZR86_RS17385 are separated by 96 nucleotides
ABZR86_RS17385 and ABZR86_RS17390 are separated by 29 nucleotides
ABZR86_RS17370: ABZR86_RS17370 - hypothetical protein, at 3,924,171 to 3,925,583
_RS17370
ABZR86_RS17375: ABZR86_RS17375 - ABC transporter ATP-binding protein, at 3,925,580 to 3,926,503
_RS17375
ABZR86_RS17380: ABZR86_RS17380 - LON peptidase substrate-binding domain-containing protein, at 3,926,591 to 3,927,193
_RS17380
ABZR86_RS17385: ABZR86_RS17385 - NAD(P)-dependent oxidoreductase, at 3,927,290 to 3,928,108
_RS17385
ABZR86_RS17390: ABZR86_RS17390 - VOC family protein, at 3,928,138 to 3,928,560
_RS17390
Group
Condition
ABZR86
_RS17370
ABZR86
_RS17375
ABZR86
_RS17380
ABZR86
_RS17385
ABZR86
_RS17390
carbon source
D-Fructose (C)
+0.1
-0.5
-0.9
-0.3
-0.1
stress
Nalidixic 0.08 mg/ml
+0.0
-0.1
-1.5
+0.1
-0.1
carbon source
pyruvate (C)
-0.1
-0.0
-0.8
-0.3
-0.0
carbon source
D-Glucose (C)
-0.0
+0.0
-0.6
-0.3
-0.2
stress
Fusidic 0.2 mg/ml
-0.1
+0.1
-1.0
-0.1
+0.0
stress
Chlorite 0.32 mM
-0.2
-0.1
-0.5
-0.1
-0.1
stress
Tetracycline 0.024 mg/ml
+0.2
+0.2
-1.2
-0.2
+0.0
carbon source
a-Cyclodextrin (C)
-0.1
+0.1
-0.6
-0.2
-0.0
stress
A22 0.02 mg/ml
-0.1
-0.0
-0.6
+0.1
-0.2
stress
Chloramphenicol 0.008 mg/ml
+0.0
-0.0
-0.8
+0.1
-0.1
lb
LB
-0.0
+0.1
-0.8
+0.1
-0.2
stress
Spectinomycin 0.04 mg/ml
-0.1
-0.0
-0.7
+0.3
-0.1
stress
Ceftazidime 0.05 mg/ml
-0.0
+0.2
-0.6
-0.2
+0.0
carbon source
D-Glucose (C)
-0.1
+0.1
-0.7
+0.1
-0.0
carbon source
NAG (C)
+0.1
+0.2
+0.9
+0.2
-1.9
nitrogen source
L-Lysine (N)
-0.1
+0.1
-0.4
-0.3
+0.2
stress
Fusidic 0.4 mg/ml
+0.1
+0.1
-0.9
+0.2
+0.3
stress
nitrate 200 mM
-0.0
-0.1
+0.5
-0.4
+0.2
nitrogen source
nitrate (N)
-0.3
-0.1
+0.6
+0.1
-0.2
carbon source
D-Galactose (C)
+0.1
+0.3
+1.3
+1.1
-2.4
carbon source
NAG (C)
+0.2
+0.3
+0.5
+0.8
-1.3
nitrogen source
Glucuronamide (N)
-0.0
-0.0
+0.7
+0.1
-0.3
stress
Sisomicin 0.016 mg/ml
-0.2
-0.2
+0.7
+0.0
+0.2
stress
Chloramphenicol 0.012 mg/ml
+0.0
-0.1
+0.3
+0.4
+0.2
nitrogen source
L-Leucine (N)
-0.0
-0.0
+0.4
+0.4
+0.1
lb
LB
+0.2
+0.1
+0.6
-0.1
+0.0
stress
sodium fluoride 40 mM
-0.1
+0.1
+0.7
+0.2
+0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
+0.3
+1.4
+0.6
-1.0
lb
LB
+0.2
+0.1
+0.2
+0.4
+0.3
nitrogen source
N-Acetyl-D-glucosamine (N)
+0.1
+0.2
+1.8
+1.2
-1.6
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