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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS17225 and ABZR86_RS17230 are separated by 225 nucleotides
ABZR86_RS17230 and ABZR86_RS17235 are separated by 140 nucleotides
ABZR86_RS17235 and ABZR86_RS17240 are separated by 100 nucleotides
ABZR86_RS17240 and ABZR86_RS17245 are separated by 100 nucleotides
ABZR86_RS17225: ABZR86_RS17225 - TetR/AcrR family transcriptional regulator, at 3,889,704 to 3,890,354
_RS17225
ABZR86_RS17230: ABZR86_RS17230 - phosphomethylpyrimidine synthase ThiC, at 3,890,580 to 3,892,460
_RS17230
ABZR86_RS17235: ABZR86_RS17235 - DUF2333 family protein, at 3,892,601 to 3,893,611
_RS17235
ABZR86_RS17240: ABZR86_RS17240 - LysR family transcriptional regulator, at 3,893,712 to 3,894,605
_RS17240
ABZR86_RS17245: ABZR86_RS17245 - SDR family oxidoreductase, at 3,894,706 to 3,895,605
_RS17245
Group
Condition
ABZR86
_RS17225
ABZR86
_RS17230
ABZR86
_RS17235
ABZR86
_RS17240
ABZR86
_RS17245
carbon source
D-Maltose (C)
-1.3
-1.4
+0.1
-0.4
-0.1
carbon source
a-Cyclodextrin (C)
-1.6
-1.2
+0.0
-0.0
+0.1
nitrogen source
L-Asparagine (N)
-1.0
-0.1
-0.4
+0.1
+0.2
carbon source
D-Glucose (C)
-1.7
+0.3
-0.0
+0.2
+0.0
carbon source
pyruvate (C)
-0.6
-0.7
-0.1
+0.4
+0.0
carbon source
a-Cyclodextrin (C)
+0.1
-1.4
-0.2
+0.3
+0.2
carbon source
D-Maltose (C)
+0.7
-1.4
-0.1
+0.2
+0.2
stress
Chloramphenicol 0.008 mg/ml
-1.0
+0.2
+0.3
+0.1
+0.1
lb
LB
-0.3
+0.7
-0.2
-0.5
+0.2
nitrogen source
N-Acetyl-D-glucosamine (N)
-0.9
+1.0
-0.2
+0.1
+0.1
nitrogen source
L-Leucine (N)
+0.6
+0.1
-0.2
-0.6
+0.1
carbon source
L-Proline (C)
+0.8
-0.6
-0.3
+0.5
-0.1
carbon source
pyruvate (C)
+0.8
-1.1
+0.1
+0.7
+0.0
stress
Cisplatin 0.0032 mg/ml
+0.9
-0.2
-0.1
-0.3
+0.3
stress
Carbenicillin 0.04 mg/ml
+0.9
+0.2
-0.2
-0.3
-0.0
nitrogen source
L-Isoleucine (N)
+0.3
+0.9
-0.1
-0.4
+0.1
stress
Ceftazidime 0.1 mg/ml
+1.5
+0.1
-0.3
-0.0
-0.0
carbon source
D-Fructose (C)
+1.0
+0.7
-0.4
+0.2
-0.1
carbon source
NAG (C)
+1.9
-0.3
-0.3
+0.1
+0.1
stress
Spectinomycin 0.04 mg/ml
+1.6
+0.2
+0.1
+0.0
-0.2
stress
Nalidixic 0.02 mg/ml
+1.1
+0.3
+0.1
+0.3
+0.1
carbon source
D-Fructose (C)
+0.9
+0.7
-0.1
+0.4
+0.1
lb
LB
+2.1
+0.1
-0.0
-0.1
+0.0
stress
Fusidic 0.2 mg/ml
+2.6
+0.3
-0.1
-0.0
+0.1
carbon source
D-Cellobiose (C)
+2.4
+0.2
-0.2
+0.5
+0.0
stress
Tetracycline 0.024 mg/ml
+3.0
+0.6
+0.2
+0.3
+0.4
carbon source
D-Galactose (C)
+4.2
+1.2
-0.5
-0.0
+0.2
stress
Nalidixic 0.04 mg/ml
+6.3
+0.6
+0.1
-0.2
-0.0
stress
Nalidixic 0.08 mg/ml
+10.8
+0.1
-0.0
-0.3
+0.3
stress
Fusidic 0.4 mg/ml
+12.0
+0.5
+0.1
+0.4
+0.6
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ABZR86_RS17235
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