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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS16310 and ABZR86_RS16315 are separated by 367 nucleotides
ABZR86_RS16315 and ABZR86_RS16320 are separated by 105 nucleotides
ABZR86_RS16320 and ABZR86_RS16325 are separated by 214 nucleotides
ABZR86_RS16325 and ABZR86_RS16330 are separated by 103 nucleotides
ABZR86_RS16310: ABZR86_RS16310 - c-type cytochrome, at 3,680,817 to 3,681,338
_RS16310
ABZR86_RS16315: ABZR86_RS16315 - efflux RND transporter periplasmic adaptor subunit, at 3,681,706 to 3,682,962
_RS16315
ABZR86_RS16320: ABZR86_RS16320 - efflux RND transporter permease subunit, at 3,683,068 to 3,686,313
_RS16320
ABZR86_RS16325: ABZR86_RS16325 - efflux RND transporter permease subunit, at 3,686,528 to 3,689,656
_RS16325
ABZR86_RS16330: ABZR86_RS16330 - LysM peptidoglycan-binding domain-containing protein, at 3,689,760 to 3,690,053
_RS16330
Group
Condition
ABZR86
_RS16310
ABZR86
_RS16315
ABZR86
_RS16320
ABZR86
_RS16325
ABZR86
_RS16330
carbon source
a-Cyclodextrin (C)
-0.4
-0.5
-0.5
+0.0
-0.1
carbon source
D-Maltose (C)
-0.3
-0.5
-0.4
-0.0
-0.2
carbon source
D-Maltose (C)
-0.4
-0.5
-0.4
-0.1
+0.0
stress
Sisomicin 0.016 mg/ml
+0.7
-0.9
-0.8
-0.2
-0.0
carbon source
NAG (C)
-0.1
-0.5
-0.4
-0.1
+0.0
nitrogen source
nitrate (N)
-0.1
-0.2
-0.2
-0.1
-0.2
carbon source
pyruvate (C)
-0.2
-0.4
-0.3
-0.1
+0.3
carbon source
pyruvate (C)
-0.4
-0.2
-0.2
+0.1
+0.3
lb
LB
-0.2
-0.2
-0.2
+0.0
+0.2
stress
A22 0.02 mg/ml
-0.4
-0.0
-0.1
-0.0
+0.2
carbon source
a-Cyclodextrin (C)
-0.2
-0.3
-0.2
-0.0
+0.4
nitrogen source
L-Asparagine (N)
+0.3
+0.1
-0.0
-0.0
-0.6
stress
Spectinomycin 0.04 mg/ml
-0.4
+0.3
+0.1
-0.0
-0.2
nitrogen source
L-Lysine (N)
-0.3
+0.2
+0.3
-0.2
-0.2
stress
Chloramphenicol 0.012 mg/ml
-0.4
+0.0
+0.0
+0.0
+0.3
nitrogen source
N-Acetyl-D-glucosamine (N)
+0.3
-0.3
-0.1
+0.0
+0.2
carbon source
D-Cellobiose (C)
-0.3
-0.1
+0.2
-0.0
+0.2
stress
Fusidic 0.4 mg/ml
+0.7
-0.5
-0.3
+0.2
+0.0
stress
Tetracycline 0.024 mg/ml
-0.4
+0.2
+0.3
+0.0
+0.1
nitrogen source
Casamino Acids (N)
-0.2
+0.3
+0.2
-0.1
+0.0
carbon source
D-Cellobiose (C)
-0.5
+0.5
+0.4
-0.1
+0.0
nitrogen source
L-Leucine (N)
-0.2
+0.3
+0.5
+0.0
+0.0
stress
Chlorite 0.32 mM
+0.8
+0.1
-0.0
-0.1
+0.0
carbon source
D-Galactose (C)
+0.6
+0.2
+0.1
+0.0
-0.0
carbon source
L-Alanine (C)
-0.1
+0.5
+0.3
+0.2
+0.3
carbon source
L-Alanine (C)
-0.1
+0.5
+0.4
+0.2
+0.3
nitrogen source
L-Arginine (N)
-0.1
+0.8
+0.9
-0.1
-0.0
nitrogen source
L-Proline (N)
+0.2
+1.0
+1.0
-0.1
+0.4
carbon source
D-Fructose (C)
-0.2
+3.3
+3.1
+0.0
+0.1
carbon source
D-Fructose (C)
-0.2
+3.8
+3.8
-0.0
+0.2
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