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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS14905 and ABZR86_RS14910 overlap by 4 nucleotides
ABZR86_RS14910 and ABZR86_RS14915 are separated by 4 nucleotides
ABZR86_RS14915 and ABZR86_RS14920 are separated by 110 nucleotides
ABZR86_RS14920 and ABZR86_RS14925 are separated by 85 nucleotides
ABZR86_RS14905: ABZR86_RS14905 - sugar ABC transporter permease, at 3,349,861 to 3,350,739
_RS14905
ABZR86_RS14910: ABZR86_RS14910 - carbohydrate ABC transporter permease, at 3,350,736 to 3,351,557
_RS14910
ABZR86_RS14915: ABZR86_RS14915 - discoidin domain-containing protein, at 3,351,562 to 3,354,714
_RS14915
ABZR86_RS14920: ABZR86_RS14920 - pirin family protein, at 3,354,825 to 3,355,658
_RS14920
ABZR86_RS14925: ABZR86_RS14925 - YecA family protein, at 3,355,744 to 3,356,433
_RS14925
Group
Condition
ABZR86
_RS14905
ABZR86
_RS14910
ABZR86
_RS14915
ABZR86
_RS14920
ABZR86
_RS14925
lb
LB
-0.1
-0.4
-0.2
-0.3
-0.1
stress
Dimethyl Sulfoxide 7.5 vol%
+0.1
+0.0
-0.1
+0.0
-0.6
carbon source
D-Fructose (C)
+0.1
-0.3
+0.1
+0.0
-0.3
carbon source
D-Cellobiose (C)
+0.1
-0.2
+0.0
-0.1
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
+0.1
-0.1
-0.1
-0.2
stress
nitrate 200 mM
-0.2
-0.1
-0.1
-0.2
+0.1
carbon source
NAG (C)
-0.1
-0.1
+0.1
-0.3
-0.1
carbon source
D-Galactose (C)
+0.1
+0.2
+0.1
-0.0
-0.6
nitrogen source
L-Isoleucine (N)
-0.1
-0.1
-0.2
-0.1
+0.2
carbon source
D-Fructose (C)
-0.2
-0.2
+0.1
-0.0
+0.2
stress
Chlorite 0.32 mM
+0.1
-0.1
+0.1
-0.1
-0.2
stress
Sisomicin 0.016 mg/ml
-0.0
-0.1
+0.0
-0.3
+0.3
stress
Fusidic 0.2 mg/ml
-0.1
-0.1
-0.1
-0.1
+0.3
carbon source
NAG (C)
-0.0
+0.2
+0.1
-0.1
-0.3
carbon source
L-Alanine (C)
-0.0
-0.2
+0.1
-0.2
+0.2
stress
Paraquat dichloride 0.1 mg/ml
+0.1
-0.3
+0.0
-0.1
+0.2
stress
Ceftazidime 0.1 mg/ml
+0.1
+0.2
-0.1
+0.1
-0.3
nitrogen source
L-Asparagine (N)
+0.2
+0.2
-0.1
-0.3
+0.1
stress
nitrate 150 mM
+0.2
+0.2
-0.1
+0.0
-0.2
carbon source
pyruvate (C)
-0.0
+0.2
+0.1
+0.1
-0.2
stress
Nalidixic 0.01 mg/ml
-0.0
+0.1
-0.1
-0.1
+0.3
nitrogen source
L-Arginine (N)
-0.2
+0.1
-0.1
-0.0
+0.4
stress
Tetracycline 0.012 mg/ml
-0.0
+0.2
-0.2
+0.0
+0.3
nitrogen source
L-Proline (N)
+0.0
-0.0
-0.0
+0.0
+0.5
stress
Paraquat dichloride 0.2 mg/ml
-0.1
+0.1
+0.0
-0.0
+0.5
stress
Nalidixic 0.08 mg/ml
-0.1
-0.1
-0.0
+0.1
+0.8
stress
Tetracycline 0.024 mg/ml
+0.0
-0.1
-0.1
+0.0
+0.9
stress
Nalidixic 0.04 mg/ml
+0.1
+0.0
+0.0
+0.0
+0.6
carbon source
L-Alanine (C)
-0.1
+0.1
+0.1
+0.0
+0.6
stress
Fusidic 0.4 mg/ml
+0.2
+0.1
+0.0
-0.2
+0.7
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