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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS14585 and ABZR86_RS14590 are separated by 11 nucleotides
ABZR86_RS14590 and ABZR86_RS14595 overlap by 4 nucleotides
ABZR86_RS14595 and ABZR86_RS14600 are separated by 76 nucleotides
ABZR86_RS14600 and ABZR86_RS14605 are separated by 1 nucleotides
ABZR86_RS14585: ABZR86_RS14585 - YafY family protein, at 3,264,196 to 3,265,152
_RS14585
ABZR86_RS14590: ABZR86_RS14590 - autotransporter outer membrane beta-barrel domain-containing protein, at 3,265,164 to 3,266,177
_RS14590
ABZR86_RS14595: ABZR86_RS14595 - hypothetical protein, at 3,266,174 to 3,266,641
_RS14595
ABZR86_RS14600: ABZR86_RS14600 - conjugative transfer signal peptidase TraF, at 3,266,718 to 3,267,305
_RS14600
ABZR86_RS14605: ABZR86_RS14605 - fimbrial protein, at 3,267,307 to 3,268,296
_RS14605
Group
Condition
ABZR86
_RS14585
ABZR86
_RS14590
ABZR86
_RS14595
ABZR86
_RS14600
ABZR86
_RS14605
stress
Carbenicillin 0.02 mg/ml
+0.1
-0.2
-0.5
+0.1
-0.0
nitrogen source
L-Asparagine (N)
+0.1
-0.0
-0.2
-0.3
-0.2
carbon source
a-Cyclodextrin (C)
+0.2
-0.0
-0.5
-0.0
-0.2
carbon source
D-Fructose (C)
-0.5
-0.3
-0.1
+0.1
+0.2
carbon source
D-Cellobiose (C)
+0.2
+0.1
-0.4
-0.2
-0.2
carbon source
D-Cellobiose (C)
-0.2
-0.3
+0.2
-0.3
+0.1
stress
Carbenicillin 0.04 mg/ml
+0.0
-0.1
-0.7
+0.3
+0.0
stress
Tetracycline 0.024 mg/ml
+0.2
-0.3
+0.3
-0.3
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
+0.0
-0.4
-0.2
+0.2
stress
Fusidic 0.4 mg/ml
+0.1
-0.2
+0.2
-0.4
+0.2
carbon source
L-Proline (C)
-0.2
-0.2
+0.3
+0.2
-0.1
stress
nitrite 6 mM
+0.2
-0.2
-0.3
+0.2
+0.2
carbon source
L-Alanine (C)
-0.3
-0.1
+0.5
-0.0
-0.0
carbon source
L-Proline (C)
-0.4
-0.0
+0.3
+0.2
+0.0
nitrogen source
N-Acetyl-D-glucosamine (N)
+0.3
+0.1
-0.3
-0.1
+0.2
carbon source
L-Alanine (C)
-0.0
-0.3
+0.3
+0.3
-0.1
stress
Nalidixic 0.04 mg/ml
+0.1
-0.1
+0.5
-0.3
+0.0
carbon source
a-Cyclodextrin (C)
-0.2
-0.1
+0.4
+0.2
+0.1
stress
nitrate 150 mM
+0.2
-0.3
+0.2
+0.2
+0.1
stress
Cisplatin 0.0032 mg/ml
+0.2
-0.2
+0.5
-0.1
-0.0
stress
Ceftazidime 0.05 mg/ml
+0.2
-0.1
+0.6
-0.1
-0.0
stress
D-Cycloserine 0.032 mg/ml
+0.1
-0.1
+0.6
-0.1
+0.1
stress
Thallium(I) acetate 0.016 mg/ml
+0.1
-0.1
+0.2
+0.2
+0.2
stress
Zinc 2.5 mM
+0.1
-0.1
+0.9
-0.0
-0.1
carbon source
D-Galactose (C)
+0.1
-0.1
+0.6
+0.3
-0.1
stress
Fusidic 0.2 mg/ml
+0.4
-0.0
+0.5
-0.0
-0.1
nitrogen source
Glucuronamide (N)
+0.5
-0.1
+0.3
+0.1
+0.1
lb
LB
+0.2
+0.1
+0.7
-0.0
-0.0
carbon source
D-Maltose (C)
+0.0
+0.0
+0.7
+0.2
+0.1
lb
LB
+0.5
-0.1
+0.6
+0.3
+0.1
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