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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS14555 and ABZR86_RS14560 are separated by 172 nucleotides
ABZR86_RS14560 and ABZR86_RS14565 are separated by 19 nucleotides
ABZR86_RS14565 and ABZR86_RS14570 are separated by 79 nucleotides
ABZR86_RS14570 and ABZR86_RS14575 overlap by 16 nucleotides
ABZR86_RS14555: ABZR86_RS14555 - pirin family protein, at 3,259,245 to 3,259,946
_RS14555
ABZR86_RS14560: ABZR86_RS14560 - LysR substrate-binding domain-containing protein, at 3,260,119 to 3,261,036
_RS14560
ABZR86_RS14565: ABZR86_RS14565 - helix-turn-helix transcriptional regulator, at 3,261,056 to 3,261,586
_RS14565
ABZR86_RS14570: ABZR86_RS14570 - NAD(P)-dependent oxidoreductase, at 3,261,666 to 3,262,649
_RS14570
ABZR86_RS14575: ABZR86_RS14575 - helix-turn-helix domain-containing protein, at 3,262,634 to 3,263,443
_RS14575
Group
Condition
ABZR86
_RS14555
ABZR86
_RS14560
ABZR86
_RS14565
ABZR86
_RS14570
ABZR86
_RS14575
stress
Ceftazidime 0.1 mg/ml
-0.1
-0.1
-0.5
-0.3
-0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.2
-0.1
+0.1
-0.4
-0.2
stress
perchlorate 75 mM
-0.1
+0.2
-0.6
-0.1
-0.2
stress
Carbenicillin 0.04 mg/ml
-0.0
+0.0
-0.3
-0.2
-0.1
nitrogen source
Glucuronamide (N)
-0.1
-0.3
-0.1
-0.1
+0.1
lb
LB
+0.1
+0.2
-0.2
-0.3
-0.2
carbon source
D-Fructose (C)
-0.0
+0.1
+0.3
-0.7
+0.0
stress
Nalidixic 0.08 mg/ml
-0.2
-0.2
+0.3
-0.3
+0.1
stress
Chloramphenicol 0.008 mg/ml
-0.1
-0.3
+0.4
-0.3
-0.0
carbon source
L-Alanine (C)
-0.2
-0.3
+0.1
+0.2
-0.1
stress
A22 0.02 mg/ml
+0.1
-0.0
-0.2
-0.2
+0.1
carbon source
D-Galactose (C)
-0.3
-0.1
+0.1
+0.2
-0.1
stress
Ceftazidime 0.05 mg/ml
+0.0
+0.1
-0.4
-0.1
+0.3
carbon source
a-Cyclodextrin (C)
-0.3
-0.1
+0.2
-0.0
+0.2
lb
LB
+0.0
-0.1
+0.3
-0.2
-0.1
carbon source
D-Maltose (C)
+0.1
-0.1
+0.4
-0.3
+0.0
lb
LB
+0.0
+0.2
-0.3
+0.1
+0.1
stress
Tetracycline 0.024 mg/ml
+0.3
+0.2
-0.0
-0.3
-0.0
nitrogen source
L-Proline (N)
-0.0
+0.0
+0.2
-0.2
+0.2
stress
Fusidic 0.4 mg/ml
-0.1
+0.4
-0.1
+0.2
-0.1
stress
Spectinomycin 0.04 mg/ml
-0.0
-0.1
+0.4
+0.2
-0.1
lb
LB
+0.3
+0.1
+0.1
+0.1
-0.3
nitrogen source
L-Asparagine (N)
-0.0
+0.3
+0.1
-0.2
+0.2
carbon source
pyruvate (C)
+0.1
-0.3
+0.3
+0.2
+0.0
carbon source
L-Proline (C)
+0.2
+0.3
-0.1
-0.0
+0.1
stress
Zinc 2.5 mM
-0.0
+0.2
+0.2
+0.1
+0.1
stress
A22 0.01 mg/ml
+0.2
-0.2
+0.5
-0.0
+0.1
stress
Thallium(I) acetate 0.016 mg/ml
+0.1
+0.0
+0.3
+0.2
+0.0
stress
Chlorite 0.32 mM
+0.3
+0.5
+0.3
+0.1
-0.2
nitrogen source
L-Leucine (N)
+0.1
+0.0
+0.4
+0.2
+0.2
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