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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS13990 and ABZR86_RS13995 are separated by 263 nucleotides
ABZR86_RS13995 and ABZR86_RS14000 are separated by 124 nucleotides
ABZR86_RS14000 and ABZR86_RS14005 are separated by 55 nucleotides
ABZR86_RS14005 and ABZR86_RS14010 overlap by 4 nucleotides
ABZR86_RS13990: ABZR86_RS13990 - IS30 family transposase, at 3,117,108 to 3,118,267
_RS13990
ABZR86_RS13995: ABZR86_RS13995 - hypothetical protein, at 3,118,531 to 3,118,740
_RS13995
ABZR86_RS14000: ABZR86_RS14000 - phage portal protein, at 3,118,865 to 3,119,497
_RS14000
ABZR86_RS14005: ABZR86_RS14005 - hypothetical protein, at 3,119,553 to 3,120,041
_RS14005
ABZR86_RS14010: ABZR86_RS14010 - RHS repeat-associated core domain-containing protein, at 3,120,038 to 3,124,669
_RS14010
Group
Condition
ABZR86
_RS13990
ABZR86
_RS13995
ABZR86
_RS14000
ABZR86
_RS14005
ABZR86
_RS14010
carbon source
D-Galactose (C)
+0.3
-0.0
+0.1
-1.9
+0.0
carbon source
a-Cyclodextrin (C)
-0.5
+0.0
-0.0
-0.5
-0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.3
-0.3
+0.0
-0.9
+0.0
carbon source
D-Glucose (C)
-0.2
-0.4
-0.0
-0.3
+0.0
nitrogen source
L-Proline (N)
-0.2
-0.3
-0.1
-0.2
-0.0
carbon source
NAG (C)
-0.1
+0.1
+0.0
-0.8
+0.0
carbon source
D-Maltose (C)
-0.1
-0.2
+0.1
-0.4
-0.0
carbon source
D-Fructose (C)
-0.4
-0.0
+0.2
-0.4
-0.0
carbon source
D-Maltose (C)
-0.3
-0.2
+0.0
-0.1
+0.0
carbon source
a-Cyclodextrin (C)
+0.2
-0.3
+0.0
-0.4
-0.0
carbon source
NAG (C)
+0.1
+0.2
-0.1
-0.8
+0.1
carbon source
D-Fructose (C)
+0.1
-0.2
-0.2
-0.2
+0.1
carbon source
D-Glucose (C)
+0.3
-0.1
-0.1
-0.2
-0.0
carbon source
L-Proline (C)
-0.1
+0.1
+0.1
-0.4
+0.1
nitrogen source
N-Acetyl-D-glucosamine (N)
+0.6
+0.1
+0.2
-1.0
+0.1
stress
sodium fluoride 40 mM
+0.4
-0.2
-0.1
-0.1
+0.0
stress
Sisomicin 0.016 mg/ml
-0.3
+0.2
+0.1
+0.0
+0.1
nitrogen source
L-Arginine (N)
+0.4
-0.2
+0.0
-0.0
+0.0
stress
Chloride 250 mM
+0.4
-0.2
+0.1
+0.1
-0.0
stress
Chlorite 0.32 mM
+0.6
-0.1
+0.1
-0.0
+0.0
stress
A22 0.02 mg/ml
+0.4
+0.1
-0.0
+0.1
-0.0
stress
Spectinomycin 0.04 mg/ml
-0.1
+0.2
+0.1
+0.4
+0.0
stress
Chloramphenicol 0.012 mg/ml
+0.4
+0.0
+0.1
+0.0
+0.0
stress
Carbenicillin 0.04 mg/ml
+0.4
+0.1
+0.0
+0.1
+0.0
stress
Fusidic 0.4 mg/ml
+0.3
+0.2
+0.2
-0.1
+0.1
nitrogen source
L-Isoleucine (N)
+0.6
-0.1
+0.2
-0.0
+0.0
nitrogen source
L-Lysine (N)
+0.5
+0.1
+0.1
+0.2
+0.1
nitrogen source
L-Asparagine (N)
+0.7
-0.1
+0.3
+0.1
+0.1
lb
LB
+0.6
-0.0
+0.2
+0.3
+0.2
stress
Ceftazidime 0.1 mg/ml
+0.6
+0.3
+0.3
+0.3
+0.3
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