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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS13675 and ABZR86_RS13680 are separated by 8 nucleotides
ABZR86_RS13680 and ABZR86_RS13685 are separated by 7 nucleotides
ABZR86_RS13685 and ABZR86_RS13690 overlap by 4 nucleotides
ABZR86_RS13690 and ABZR86_RS13695 overlap by 4 nucleotides
ABZR86_RS13675: ABZR86_RS13675 - LysM domain-containing protein, at 3,056,134 to 3,057,501
_RS13675
ABZR86_RS13680: ABZR86_RS13680 - type III secretion HpaP family protein, at 3,057,510 to 3,058,220
_RS13680
ABZR86_RS13685: ABZR86_RS13685 - hypothetical protein, at 3,058,228 to 3,058,716
_RS13685
ABZR86_RS13690: ABZR86_RS13690 - FliI/YscN family ATPase, at 3,058,713 to 3,060,062
_RS13690
ABZR86_RS13695: ABZR86_RS13695 - FliH/SctL family protein, at 3,060,059 to 3,060,685
_RS13695
Group
Condition
ABZR86
_RS13675
ABZR86
_RS13680
ABZR86
_RS13685
ABZR86
_RS13690
ABZR86
_RS13695
lb
LB
N.D.
-1.0
N.D.
+0.1
N.D.
carbon source
L-Proline (C)
N.D.
-0.8
N.D.
-0.0
N.D.
stress
Fusidic 0.2 mg/ml
N.D.
-0.8
N.D.
+0.0
N.D.
carbon source
D-Glucose (C)
N.D.
-0.7
N.D.
-0.0
N.D.
carbon source
NAG (C)
N.D.
-0.5
N.D.
-0.1
N.D.
stress
Zinc 2.5 mM
N.D.
-0.5
N.D.
-0.0
N.D.
lb
LB
N.D.
-0.7
N.D.
+0.1
N.D.
stress
Nalidixic 0.02 mg/ml
N.D.
-0.5
N.D.
-0.1
N.D.
stress
perchlorate 75 mM
N.D.
-0.4
N.D.
-0.1
N.D.
nitrogen source
Glucuronamide (N)
N.D.
-0.5
N.D.
-0.1
N.D.
carbon source
D-Glucose (C)
N.D.
-0.4
N.D.
-0.1
N.D.
nitrogen source
L-Lysine (N)
N.D.
-0.5
N.D.
-0.0
N.D.
carbon source
a-Cyclodextrin (C)
N.D.
-0.4
N.D.
+0.0
N.D.
stress
Chloramphenicol 0.008 mg/ml
N.D.
-0.4
N.D.
+0.1
N.D.
stress
A22 0.01 mg/ml
N.D.
-0.3
N.D.
+0.0
N.D.
stress
Ceftazidime 0.1 mg/ml
N.D.
+0.2
N.D.
-0.2
N.D.
carbon source
L-Alanine (C)
N.D.
+0.3
N.D.
-0.1
N.D.
stress
Tetracycline 0.024 mg/ml
N.D.
+0.5
N.D.
-0.2
N.D.
carbon source
D-Fructose (C)
N.D.
+0.5
N.D.
-0.2
N.D.
carbon source
D-Galactose (C)
N.D.
+0.4
N.D.
-0.0
N.D.
carbon source
a-Cyclodextrin (C)
N.D.
+0.4
N.D.
+0.0
N.D.
stress
Tetracycline 0.012 mg/ml
N.D.
+0.3
N.D.
+0.1
N.D.
carbon source
D-Fructose (C)
N.D.
+0.3
N.D.
+0.1
N.D.
stress
nitrate 150 mM
N.D.
+0.4
N.D.
+0.0
N.D.
nitrogen source
D-Glucosamine Hydrochloride (N)
N.D.
+0.5
N.D.
-0.0
N.D.
stress
Chloramphenicol 0.012 mg/ml
N.D.
+0.6
N.D.
-0.1
N.D.
stress
sodium fluoride 40 mM
N.D.
+0.5
N.D.
+0.0
N.D.
stress
Sisomicin 0.016 mg/ml
N.D.
+0.4
N.D.
+0.1
N.D.
lb
LB
N.D.
+0.6
N.D.
-0.1
N.D.
stress
nitrite 6 mM
N.D.
+0.4
N.D.
+0.1
N.D.
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