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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS13205 and ABZR86_RS13210 are separated by 222 nucleotides
ABZR86_RS13210 and ABZR86_RS13215 overlap by 1 nucleotides
ABZR86_RS13215 and ABZR86_RS13220 are separated by 1121 nucleotides
ABZR86_RS13220 and ABZR86_RS13225 are separated by 60 nucleotides
ABZR86_RS13205: ABZR86_RS13205 - potassium-transporting ATPase subunit KdpC, at 2,964,227 to 2,964,805
_RS13205
ABZR86_RS13210: ABZR86_RS13210 - sensor histidine kinase KdpD, at 2,965,028 to 2,967,682
_RS13210
ABZR86_RS13215: ABZR86_RS13215 - response regulator, at 2,967,682 to 2,968,377
_RS13215
ABZR86_RS13220: ABZR86_RS13220 - AraC family transcriptional regulator, at 2,969,499 to 2,970,410
_RS13220
ABZR86_RS13225: ABZR86_RS13225 - HAD family hydrolase, at 2,970,471 to 2,971,160
_RS13225
Group
Condition
ABZR86
_RS13205
ABZR86
_RS13210
ABZR86
_RS13215
ABZR86
_RS13220
ABZR86
_RS13225
carbon source
D-Galactose (C)
-0.1
-0.8
-0.3
+0.1
-0.8
lb
LB
-0.7
-0.1
-0.2
-0.4
+0.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.3
-0.2
-0.8
+0.1
-0.5
carbon source
NAG (C)
-0.2
-0.7
-0.2
+0.2
-0.2
carbon source
D-Glucose (C)
-0.2
+0.3
-0.0
+0.2
-1.2
carbon source
NAG (C)
-0.1
-0.8
+0.1
+0.2
-0.4
carbon source
a-Cyclodextrin (C)
+0.1
-0.0
+0.0
-0.0
-0.9
carbon source
a-Cyclodextrin (C)
-0.0
+0.3
-0.3
-0.3
-0.4
carbon source
L-Proline (C)
+0.1
-0.2
+0.3
+0.1
-0.9
stress
Carbenicillin 0.02 mg/ml
-0.4
-0.1
-0.3
-0.1
+0.4
carbon source
L-Alanine (C)
-0.0
+0.2
+0.2
+0.0
-0.8
carbon source
pyruvate (C)
-0.1
+0.7
-0.3
-0.3
-0.3
stress
perchlorate 75 mM
-0.3
+0.1
-0.2
-0.2
+0.4
carbon source
D-Cellobiose (C)
-0.2
+0.0
+0.5
+0.3
-0.9
carbon source
D-Fructose (C)
+0.1
+1.0
-0.1
+0.2
-1.3
stress
A22 0.02 mg/ml
-0.1
-0.0
-0.5
+0.2
+0.3
nitrogen source
L-Lysine (N)
-0.0
-0.1
+0.1
+0.4
-0.5
stress
Tetracycline 0.024 mg/ml
+0.2
-0.3
-0.4
-0.0
+0.4
carbon source
D-Glucose (C)
+0.4
-0.1
-0.1
+0.3
-0.6
stress
Fusidic 0.2 mg/ml
+0.5
-0.3
-0.5
-0.1
+0.4
stress
D-Cycloserine 0.032 mg/ml
-0.1
-0.2
-0.3
+0.2
+0.4
stress
Nalidixic 0.04 mg/ml
-0.4
-0.0
-0.2
+0.2
+0.5
stress
Nalidixic 0.02 mg/ml
+0.0
+0.1
-0.5
+0.2
+0.3
nitrogen source
L-Asparagine (N)
+0.0
-0.1
+0.4
+0.2
-0.4
stress
Ceftazidime 0.1 mg/ml
+0.2
-0.3
-0.3
+0.1
+0.4
carbon source
pyruvate (C)
-0.2
+0.7
+0.2
+0.3
-0.6
stress
Spectinomycin 0.04 mg/ml
+0.1
-0.2
-0.2
+0.1
+0.6
nitrogen source
nitrate (N)
+0.2
-0.1
-0.4
+0.1
+0.7
carbon source
D-Fructose (C)
+0.4
+1.2
+0.4
-0.0
-1.1
stress
Fusidic 0.4 mg/ml
+0.4
-0.1
-0.2
+0.2
+0.6
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