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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS12725 and ABZR86_RS12730 are separated by 130 nucleotides
ABZR86_RS12730 and ABZR86_RS12735 overlap by 4 nucleotides
ABZR86_RS12735 and ABZR86_RS12740 overlap by 90 nucleotides
ABZR86_RS12740 and ABZR86_RS12745 are separated by 219 nucleotides
ABZR86_RS12725: ABZR86_RS12725 - thiol:disulfide interchange protein DsbA/DsbL, at 2,852,280 to 2,852,936
_RS12725
ABZR86_RS12730: ABZR86_RS12730 - endonuclease/exonuclease/phosphatase family protein, at 2,853,067 to 2,853,873
_RS12730
ABZR86_RS12735: ABZR86_RS12735 - hypothetical protein, at 2,853,870 to 2,854,286
_RS12735
ABZR86_RS12740: ABZR86_RS12740 - glycoside hydrolase family 17, at 2,854,197 to 2,855,804
_RS12740
ABZR86_RS12745: ABZR86_RS12745 - transglycosylase SLT domain-containing protein, at 2,856,024 to 2,858,132
_RS12745
Group
Condition
ABZR86
_RS12725
ABZR86
_RS12730
ABZR86
_RS12735
ABZR86
_RS12740
ABZR86
_RS12745
stress
Ceftazidime 0.1 mg/ml
-0.2
+0.0
+0.2
-0.1
-3.7
stress
Carbenicillin 0.02 mg/ml
-0.1
-0.2
+0.1
+0.1
-3.1
stress
Carbenicillin 0.04 mg/ml
+0.1
-0.2
+0.0
+0.1
-3.0
stress
Ceftazidime 0.05 mg/ml
+0.1
+0.1
-0.1
-0.1
-2.7
stress
Fusidic 0.4 mg/ml
+0.2
+0.7
-0.2
-0.5
-2.1
carbon source
NAG (C)
+0.0
-0.5
-0.4
-0.1
-0.5
stress
Fusidic 0.2 mg/ml
+0.2
+0.2
-0.2
-0.3
-1.4
nitrogen source
nitrate (N)
-0.4
-0.0
-0.1
-0.1
-0.5
carbon source
pyruvate (C)
+0.1
-0.8
-0.0
+0.1
-0.3
carbon source
pyruvate (C)
+0.0
-0.2
-0.2
-0.2
-0.3
stress
Zinc 2.5 mM
+0.1
+0.0
-0.1
-0.4
-0.3
stress
nitrate 200 mM
+0.0
-0.1
+0.1
-0.1
-0.6
carbon source
D-Fructose (C)
+0.1
-0.1
-0.1
-0.2
-0.3
carbon source
NAG (C)
+0.1
-0.4
-0.2
+0.1
-0.2
carbon source
D-Cellobiose (C)
+0.3
+0.0
-0.4
-0.0
-0.3
stress
Spectinomycin 0.04 mg/ml
+0.2
+0.3
-0.3
-0.0
-0.5
stress
Nalidixic 0.01 mg/ml
-0.1
+0.3
+0.0
-0.2
-0.3
carbon source
a-Cyclodextrin (C)
+0.2
+0.1
-0.3
+0.1
-0.3
carbon source
L-Alanine (C)
+0.1
+0.3
-0.5
-0.0
-0.1
stress
Nalidixic 0.04 mg/ml
-0.0
+0.1
+0.3
+0.0
-0.5
nitrogen source
L-Asparagine (N)
+0.3
-0.2
+0.2
-0.2
-0.0
stress
Tetracycline 0.024 mg/ml
+0.1
+0.6
-0.1
-0.2
-0.4
stress
Nalidixic 0.08 mg/ml
+0.1
+0.2
+0.1
-0.1
-0.3
stress
Paraquat dichloride 0.2 mg/ml
+0.1
-0.3
+0.2
+0.2
-0.1
carbon source
D-Galactose (C)
+0.2
-0.4
+0.3
+0.4
-0.3
stress
Paraquat dichloride 0.05 mg/ml
+0.2
-0.2
+0.2
-0.1
+0.1
lb
LB
+0.0
+0.1
-0.2
-0.1
+0.4
carbon source
L-Alanine (C)
+0.2
+0.6
-0.0
+0.1
-0.2
stress
nitrate 150 mM
+0.1
+0.2
+0.3
+0.1
+0.0
stress
Chlorite 0.32 mM
+0.0
+1.2
+0.3
+0.0
-0.2
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