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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS11005 and ABZR86_RS11010 are separated by 3 nucleotides
ABZR86_RS11010 and ABZR86_RS11015 are separated by 4 nucleotides
ABZR86_RS11015 and ABZR86_RS11020 are separated by 228 nucleotides
ABZR86_RS11020 and ABZR86_RS11025 are separated by 13 nucleotides
ABZR86_RS11005: ABZR86_RS11005 - fimbria/pilus outer membrane usher protein, at 2,443,553 to 2,445,919
_RS11005
ABZR86_RS11010: ABZR86_RS11010 - fimbria/pilus periplasmic chaperone, at 2,445,923 to 2,446,642
_RS11010
ABZR86_RS11015: ABZR86_RS11015 - spore coat U domain-containing protein, at 2,446,647 to 2,447,162
_RS11015
ABZR86_RS11020: ABZR86_RS11020 - succinate--CoA ligase subunit alpha, at 2,447,391 to 2,448,266
_RS11020
ABZR86_RS11025: ABZR86_RS11025 - ADP-forming succinate--CoA ligase subunit beta, at 2,448,280 to 2,449,440
_RS11025
Group
Condition
ABZR86
_RS11005
ABZR86
_RS11010
ABZR86
_RS11015
ABZR86
_RS11020
ABZR86
_RS11025
lb
LB
-0.0
-0.7
-0.5
N.D.
N.D.
carbon source
NAG (C)
-0.1
-0.2
-0.4
N.D.
N.D.
carbon source
NAG (C)
+0.0
-0.3
-0.4
N.D.
N.D.
lb
LB
+0.0
-0.4
-0.2
N.D.
N.D.
nitrogen source
L-Lysine (N)
-0.0
-0.3
-0.2
N.D.
N.D.
stress
Nalidixic 0.08 mg/ml
-0.1
-0.0
-0.3
N.D.
N.D.
lb
LB
-0.1
-0.2
-0.2
N.D.
N.D.
carbon source
a-Cyclodextrin (C)
-0.0
-0.1
-0.3
N.D.
N.D.
carbon source
pyruvate (C)
-0.0
-0.0
-0.4
N.D.
N.D.
carbon source
L-Proline (C)
+0.0
-0.1
-0.3
N.D.
N.D.
stress
D-Cycloserine 0.032 mg/ml
-0.0
-0.0
-0.2
N.D.
N.D.
carbon source
D-Maltose (C)
-0.0
+0.0
-0.3
N.D.
N.D.
stress
Chlorite 0.32 mM
+0.0
-0.5
+0.2
N.D.
N.D.
stress
Thallium(I) acetate 0.016 mg/ml
-0.0
-0.2
-0.0
N.D.
N.D.
carbon source
D-Maltose (C)
-0.1
-0.2
+0.0
N.D.
N.D.
carbon source
L-Proline (C)
-0.0
+0.1
-0.3
N.D.
N.D.
nitrogen source
L-Proline (N)
+0.1
-0.4
+0.2
N.D.
N.D.
carbon source
D-Glucose (C)
-0.0
-0.3
+0.2
N.D.
N.D.
carbon source
L-Alanine (C)
+0.1
+0.1
-0.2
N.D.
N.D.
stress
nitrite 6 mM
+0.1
-0.2
+0.1
N.D.
N.D.
carbon source
D-Fructose (C)
+0.2
+0.1
-0.2
N.D.
N.D.
carbon source
D-Cellobiose (C)
-0.0
+0.3
-0.2
N.D.
N.D.
stress
Fusidic 0.4 mg/ml
+0.2
-0.3
+0.3
N.D.
N.D.
carbon source
L-Alanine (C)
+0.1
+0.2
-0.1
N.D.
N.D.
stress
Spectinomycin 0.04 mg/ml
+0.2
+0.2
-0.1
N.D.
N.D.
stress
Chloramphenicol 0.008 mg/ml
+0.1
+0.2
-0.1
N.D.
N.D.
stress
Paraquat dichloride 0.1 mg/ml
+0.1
+0.2
-0.0
N.D.
N.D.
stress
Fusidic 0.2 mg/ml
+0.2
-0.1
+0.2
N.D.
N.D.
stress
Chloramphenicol 0.012 mg/ml
+0.3
+0.0
+0.1
N.D.
N.D.
stress
Tetracycline 0.024 mg/ml
+0.2
+0.3
+0.4
N.D.
N.D.
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