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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS10905 and ABZR86_RS10910 overlap by 8 nucleotides
ABZR86_RS10910 and ABZR86_RS10915 overlap by 4 nucleotides
ABZR86_RS10915 and ABZR86_RS10920 overlap by 4 nucleotides
ABZR86_RS10920 and ABZR86_RS10925 overlap by 4 nucleotides
ABZR86_RS10905: ABZR86_RS10905 - threonine-phosphate decarboxylase CobD, at 2,419,012 to 2,420,022
_RS10905
ABZR86_RS10910: ABZR86_RS10910 - adenosylcobinamide-phosphate synthase CbiB, at 2,420,015 to 2,420,920
_RS10910
ABZR86_RS10915: ABZR86_RS10915 - cobyrinate a,c-diamide synthase, at 2,420,917 to 2,422,212
_RS10915
ABZR86_RS10920: ABZR86_RS10920 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 2,422,209 to 2,422,826
_RS10920
ABZR86_RS10925: ABZR86_RS10925 - hypothetical protein, at 2,422,823 to 2,423,398
_RS10925
Group
Condition
ABZR86
_RS10905
ABZR86
_RS10910
ABZR86
_RS10915
ABZR86
_RS10920
ABZR86
_RS10925
lb
LB
-0.0
-0.0
-0.1
-0.7
-0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.0
-0.0
-0.1
-0.5
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
-0.4
-0.0
-0.1
-0.2
-0.1
carbon source
D-Fructose (C)
+0.0
+0.2
-0.3
-0.3
-0.2
stress
Tetracycline 0.024 mg/ml
+0.0
+0.3
-0.2
-0.5
-0.2
nitrogen source
L-Isoleucine (N)
-0.1
-0.0
+0.0
-0.5
+0.1
nitrogen source
N-Acetyl-D-glucosamine (N)
-0.1
+0.1
+0.1
-0.4
-0.1
carbon source
pyruvate (C)
+0.3
+0.0
-0.4
+0.1
-0.3
lb
LB
-0.1
+0.1
-0.2
+0.3
-0.3
stress
Thallium(I) acetate 0.016 mg/ml
+0.2
-0.3
-0.1
-0.1
+0.1
nitrogen source
L-Asparagine (N)
-0.4
-0.0
-0.2
+0.4
+0.2
carbon source
D-Galactose (C)
+0.1
+0.2
-0.1
-0.3
-0.1
carbon source
D-Cellobiose (C)
+0.1
+0.2
-0.2
-0.1
-0.1
carbon source
D-Fructose (C)
-0.2
+0.4
-0.2
+0.2
-0.3
stress
Spectinomycin 0.04 mg/ml
-0.4
+0.5
+0.1
+0.2
-0.4
stress
sodium fluoride 60 mM
-0.1
+0.3
-0.2
+0.3
-0.0
stress
Ceftazidime 0.05 mg/ml
+0.2
+0.3
+0.0
-0.1
-0.1
carbon source
D-Maltose (C)
+0.2
+0.3
-0.1
+0.0
-0.2
stress
Fusidic 0.4 mg/ml
+0.2
+0.2
-0.4
+0.2
+0.1
carbon source
NAG (C)
+0.2
-0.1
-0.1
+0.4
+0.0
stress
Nalidixic 0.02 mg/ml
+0.2
+0.3
-0.2
+0.1
+0.0
stress
Dimethyl Sulfoxide 7.5 vol%
+0.1
+0.4
-0.2
+0.1
-0.1
nitrogen source
Glucuronamide (N)
+0.2
+0.3
+0.1
+0.1
-0.2
nitrogen source
nitrate (N)
-0.1
+0.2
+0.1
+0.4
+0.0
carbon source
a-Cyclodextrin (C)
+0.4
+0.1
-0.1
+0.2
-0.1
carbon source
pyruvate (C)
+0.4
+0.2
-0.1
+0.2
-0.0
stress
Chloramphenicol 0.008 mg/ml
-0.1
+0.4
+0.1
+0.2
+0.1
nitrogen source
L-Leucine (N)
+0.4
+0.2
+0.0
-0.1
+0.2
nitrogen source
L-Arginine (N)
+0.3
+0.3
-0.0
+0.1
-0.0
stress
Chloride 250 mM
+0.4
+0.2
-0.0
+0.1
+0.1
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