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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS10220 and ABZR86_RS10225 are separated by 65 nucleotides
ABZR86_RS10225 and ABZR86_RS10230 are separated by 1118 nucleotides
ABZR86_RS10230 and ABZR86_RS10235 are separated by 9 nucleotides
ABZR86_RS10235 and ABZR86_RS10240 are separated by 33 nucleotides
ABZR86_RS10220: ABZR86_RS10220 - type II secretion system protein N, at 2,267,699 to 2,268,478
_RS10220
ABZR86_RS10225: ABZR86_RS10225 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 2,268,544 to 2,269,911
_RS10225
ABZR86_RS10230: ABZR86_RS10230 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 2,271,030 to 2,271,767
_RS10230
ABZR86_RS10235: ABZR86_RS10235 - DUF4279 domain-containing protein, at 2,271,777 to 2,272,175
_RS10235
ABZR86_RS10240: ABZR86_RS10240 - tetratricopeptide repeat protein, at 2,272,209 to 2,272,583
_RS10240
Group
Condition
ABZR86
_RS10220
ABZR86
_RS10225
ABZR86
_RS10230
ABZR86
_RS10235
ABZR86
_RS10240
nitrogen source
L-Asparagine (N)
-2.9
+0.2
-0.3
+0.1
-0.3
nitrogen source
L-Leucine (N)
-1.1
+0.0
-0.5
-0.2
-0.1
stress
Chloramphenicol 0.012 mg/ml
-1.2
-0.0
+0.0
-0.3
-0.1
carbon source
D-Glucose (C)
-0.6
-0.0
-0.3
-0.4
-0.2
carbon source
D-Cellobiose (C)
-0.9
-0.0
+0.2
-0.3
-0.3
carbon source
D-Fructose (C)
-1.0
-0.0
-0.5
+0.1
+0.0
carbon source
pyruvate (C)
-0.2
-0.2
-0.8
-0.3
+0.1
carbon source
D-Maltose (C)
-1.0
+0.0
+0.2
-0.4
-0.0
lb
LB
-1.0
+0.1
-0.3
-0.0
+0.0
stress
nitrate 200 mM
-0.8
+0.1
-0.2
+0.2
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.0
+0.2
-0.6
-0.3
+0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.9
+0.2
+0.1
+0.0
-0.1
stress
sodium fluoride 40 mM
-1.0
-0.0
+0.1
+0.1
+0.2
carbon source
NAG (C)
-0.8
+0.1
-0.0
-0.0
+0.3
stress
Ceftazidime 0.05 mg/ml
+0.0
+0.0
-0.7
-0.1
+0.2
nitrogen source
nitrate (N)
+0.2
-0.2
+0.2
-0.2
-0.4
stress
Tetracycline 0.024 mg/ml
-0.5
+0.0
+0.4
-0.1
-0.1
nitrogen source
L-Isoleucine (N)
+0.4
+0.1
-0.5
+0.1
-0.3
stress
Fusidic 0.2 mg/ml
-1.0
+0.1
+0.6
+0.1
+0.1
stress
Paraquat dichloride 0.1 mg/ml
-0.7
+0.1
+0.1
+0.2
+0.2
lb
LB
-0.4
+0.0
-0.2
+0.5
+0.3
carbon source
D-Maltose (C)
+0.4
-0.0
+0.5
-0.2
-0.2
stress
Sisomicin 0.016 mg/ml
-1.0
+0.2
+1.0
+0.4
+0.2
stress
Zinc 2.5 mM
+0.0
+0.0
+0.6
+0.3
-0.1
stress
Chloramphenicol 0.008 mg/ml
+1.2
+0.0
-0.2
-0.1
-0.1
lb
LB
+1.5
+0.3
-0.5
+0.2
-0.6
carbon source
L-Proline (C)
+0.8
-0.0
-0.0
+0.1
+0.1
carbon source
D-Glucose (C)
+0.6
+0.1
+0.2
+0.2
+0.0
stress
Carbenicillin 0.04 mg/ml
+0.5
+0.2
+0.2
+0.1
+0.2
stress
Fusidic 0.4 mg/ml
+0.4
-0.0
+1.6
+0.1
-0.1
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