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Gene
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Cofit
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS09760 and ABZR86_RS09765 are separated by 128 nucleotides
ABZR86_RS09765 and ABZR86_RS09770 are separated by 441 nucleotides
ABZR86_RS09770 and ABZR86_RS09775 are separated by 50 nucleotides
ABZR86_RS09775 and ABZR86_RS09780 are separated by 68 nucleotides
ABZR86_RS09760: ABZR86_RS09760 - RidA family protein, at 2,168,839 to 2,169,234
_RS09760
ABZR86_RS09765: ABZR86_RS09765 - LysR family transcriptional regulator, at 2,169,363 to 2,170,277
_RS09765
ABZR86_RS09770: ABZR86_RS09770 - IS30 family transposase, at 2,170,719 to 2,171,875
_RS09770
ABZR86_RS09775: ABZR86_RS09775 - hypothetical protein, at 2,171,926 to 2,172,243
_RS09775
ABZR86_RS09780: ABZR86_RS09780 - hypothetical protein, at 2,172,312 to 2,172,749
_RS09780
Group
Condition
ABZR86
_RS09760
ABZR86
_RS09765
ABZR86
_RS09770
ABZR86
_RS09775
ABZR86
_RS09780
carbon source
L-Proline (C)
-0.5
-0.1
N.D.
+0.1
-0.3
carbon source
D-Galactose (C)
-0.2
-0.2
N.D.
+0.0
-0.1
nitrogen source
L-Arginine (N)
+0.1
-0.1
N.D.
+0.0
-0.3
carbon source
a-Cyclodextrin (C)
-0.2
-0.2
N.D.
+0.0
+0.2
nitrogen source
L-Proline (N)
+0.2
-0.0
N.D.
-0.1
-0.1
stress
Paraquat dichloride 0.05 mg/ml
+0.1
-0.1
N.D.
-0.2
+0.1
nitrogen source
L-Asparagine (N)
-0.1
-0.2
N.D.
+0.1
+0.2
stress
perchlorate 75 mM
+0.2
-0.1
N.D.
-0.1
+0.1
carbon source
D-Glucose (C)
-0.1
-0.1
N.D.
+0.3
+0.1
carbon source
D-Cellobiose (C)
+0.2
-0.0
N.D.
+0.1
-0.1
carbon source
D-Maltose (C)
-0.2
-0.0
N.D.
+0.1
+0.2
carbon source
pyruvate (C)
+0.2
-0.1
N.D.
-0.0
+0.1
carbon source
L-Alanine (C)
+0.2
-0.2
N.D.
+0.1
+0.2
carbon source
D-Fructose (C)
+0.4
-0.1
N.D.
-0.1
+0.1
stress
Chloramphenicol 0.008 mg/ml
+0.1
-0.1
N.D.
+0.1
+0.1
carbon source
L-Alanine (C)
+0.2
-0.1
N.D.
+0.1
-0.0
stress
Tetracycline 0.024 mg/ml
+0.4
+0.0
N.D.
-0.2
+0.1
stress
Carbenicillin 0.04 mg/ml
+0.2
-0.1
N.D.
+0.1
+0.1
stress
Thallium(I) acetate 0.008 mg/ml
+0.4
-0.1
N.D.
+0.1
-0.0
stress
Nalidixic 0.01 mg/ml
+0.3
-0.1
N.D.
+0.1
+0.1
stress
Ceftazidime 0.05 mg/ml
+0.4
-0.0
N.D.
+0.1
-0.0
nitrogen source
L-Lysine (N)
+0.5
+0.0
N.D.
-0.1
+0.2
lb
LB
+0.2
+0.1
N.D.
+0.2
+0.1
stress
A22 0.02 mg/ml
+0.3
+0.1
N.D.
+0.1
+0.1
stress
Cisplatin 0.0032 mg/ml
+0.4
-0.1
N.D.
+0.0
+0.2
stress
Sisomicin 0.016 mg/ml
+0.2
+0.0
N.D.
+0.2
+0.2
stress
Nalidixic 0.02 mg/ml
+0.4
-0.0
N.D.
+0.1
+0.2
stress
Fusidic 0.4 mg/ml
+0.3
+0.1
N.D.
+0.2
+0.0
stress
Chloramphenicol 0.012 mg/ml
+0.3
+0.2
N.D.
-0.0
+0.3
lb
LB
+0.3
+0.3
N.D.
+0.3
+0.2
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