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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS09195 and ABZR86_RS09200 are separated by 33 nucleotides
ABZR86_RS09200 and ABZR86_RS09205 are separated by 37 nucleotides
ABZR86_RS09205 and ABZR86_RS09210 overlap by 4 nucleotides
ABZR86_RS09210 and ABZR86_RS09215 are separated by 240 nucleotides
ABZR86_RS09195: ABZR86_RS09195 - PilC/PilY family type IV pilus protein, at 2,043,915 to 2,048,165
_RS09195
ABZR86_RS09200: ABZR86_RS09200 - PilX N-terminal domain-containing pilus assembly protein, at 2,048,199 to 2,048,864
_RS09200
ABZR86_RS09205: ABZR86_RS09205 - PilW family protein, at 2,048,902 to 2,050,296
_RS09205
ABZR86_RS09210: ABZR86_RS09210 - type IV pilus modification protein PilV, at 2,050,293 to 2,050,889
_RS09210
ABZR86_RS09215: ABZR86_RS09215 - GspH/FimT family pseudopilin, at 2,051,130 to 2,051,717
_RS09215
Group
Condition
ABZR86
_RS09195
ABZR86
_RS09200
ABZR86
_RS09205
ABZR86
_RS09210
ABZR86
_RS09215
stress
Nalidixic 0.02 mg/ml
-0.1
-0.4
-0.2
-0.4
-0.2
lb
LB
-0.1
+0.2
-0.2
+0.1
-0.7
carbon source
D-Fructose (C)
-0.1
+0.2
-0.0
-0.6
+0.1
stress
Carbenicillin 0.04 mg/ml
+0.1
-0.1
+0.1
-0.4
+0.2
carbon source
D-Fructose (C)
-0.2
+0.4
-0.2
+0.3
-0.3
carbon source
D-Cellobiose (C)
+0.4
+0.3
+0.0
-0.2
-0.1
stress
Spectinomycin 0.04 mg/ml
-0.1
+0.1
-0.1
-0.2
+0.8
carbon source
D-Glucose (C)
+0.2
+0.2
+0.3
+0.4
-0.4
nitrogen source
nitrate (N)
+0.3
+0.4
+0.2
+0.1
-0.3
nitrogen source
L-Lysine (N)
+0.2
+0.2
+0.3
+0.2
-0.3
carbon source
L-Alanine (C)
+0.1
+0.4
+0.2
+0.4
-0.1
stress
Zinc 2.5 mM
-0.2
+0.6
+0.0
+0.4
+0.1
stress
Nalidixic 0.08 mg/ml
+0.2
+0.2
+0.4
+0.3
-0.1
carbon source
D-Glucose (C)
+0.3
+0.5
+0.2
+0.0
-0.0
carbon source
D-Maltose (C)
+0.4
+0.3
+0.3
+0.0
+0.0
carbon source
pyruvate (C)
+0.3
+0.1
+0.4
+0.2
+0.1
carbon source
D-Cellobiose (C)
+0.3
+0.5
+0.3
+0.5
-0.3
carbon source
pyruvate (C)
+0.6
+0.7
+0.3
+0.2
-0.5
nitrogen source
L-Proline (N)
+0.3
+0.5
+0.2
+0.4
-0.1
carbon source
L-Proline (C)
+0.4
+0.4
+0.3
+0.3
-0.0
carbon source
D-Maltose (C)
+0.3
+0.4
+0.3
+0.5
+0.1
nitrogen source
Glucuronamide (N)
+0.4
+0.5
+0.4
+0.6
-0.2
carbon source
a-Cyclodextrin (C)
+0.6
+0.8
+0.4
+0.2
-0.1
carbon source
a-Cyclodextrin (C)
+0.5
+0.3
+0.5
+0.5
+0.2
nitrogen source
L-Isoleucine (N)
+0.5
+0.7
+0.5
+0.6
+0.0
carbon source
NAG (C)
+0.6
+0.6
+0.6
+0.8
-0.2
carbon source
NAG (C)
+0.7
+0.7
+0.7
+0.7
+0.3
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.9
+1.1
+0.9
+0.8
+0.1
carbon source
D-Galactose (C)
+0.9
+0.8
+1.0
+1.1
-0.1
nitrogen source
N-Acetyl-D-glucosamine (N)
+0.9
+0.9
+1.0
+1.0
+0.1
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