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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS09175 and ABZR86_RS09180 are separated by 184 nucleotides
ABZR86_RS09180 and ABZR86_RS09185 are separated by 31 nucleotides
ABZR86_RS09185 and ABZR86_RS09190 are separated by 5 nucleotides
ABZR86_RS09190 and ABZR86_RS09195 overlap by 4 nucleotides
ABZR86_RS09175: ABZR86_RS09175 - catecholate siderophore receptor Fiu, at 2,039,667 to 2,041,994
_RS09175
ABZR86_RS09180: ABZR86_RS09180 - Fe2+-dependent dioxygenase, at 2,042,179 to 2,042,859
_RS09180
ABZR86_RS09185: ABZR86_RS09185 - GspH/FimT family pseudopilin, at 2,042,891 to 2,043,481
_RS09185
ABZR86_RS09190: ABZR86_RS09190 - type IV pilin protein, at 2,043,487 to 2,043,918
_RS09190
ABZR86_RS09195: ABZR86_RS09195 - PilC/PilY family type IV pilus protein, at 2,043,915 to 2,048,165
_RS09195
Group
Condition
ABZR86
_RS09175
ABZR86
_RS09180
ABZR86
_RS09185
ABZR86
_RS09190
ABZR86
_RS09195
carbon source
D-Fructose (C)
-0.2
+0.2
-0.2
-0.2
-0.1
stress
Nalidixic 0.01 mg/ml
+0.1
+0.2
-0.3
-0.2
-0.2
lb
LB
-0.1
-0.4
+0.1
-0.1
+0.2
stress
Chloramphenicol 0.012 mg/ml
+0.1
+0.2
-0.6
+0.0
+0.1
stress
Spectinomycin 0.04 mg/ml
+0.1
+0.0
+0.5
-0.4
-0.1
nitrogen source
nitrate (N)
-0.1
-0.2
+0.3
+0.1
+0.3
stress
Zinc 2.5 mM
+0.1
+0.3
+0.3
-0.1
-0.2
carbon source
D-Maltose (C)
-0.2
+0.0
+0.3
+0.1
+0.3
stress
Nalidixic 0.08 mg/ml
+0.1
+0.4
-0.2
-0.0
+0.2
carbon source
D-Cellobiose (C)
-0.1
+0.3
+0.1
+0.1
+0.3
carbon source
pyruvate (C)
-0.2
-0.0
+0.3
+0.2
+0.3
nitrogen source
L-Proline (N)
-0.1
+0.2
+0.1
+0.2
+0.3
carbon source
a-Cyclodextrin (C)
-0.2
-0.4
+0.5
+0.4
+0.5
carbon source
L-Alanine (C)
+0.3
+0.3
+0.1
+0.0
+0.1
carbon source
D-Maltose (C)
-0.2
-0.1
+0.4
+0.3
+0.4
carbon source
L-Proline (C)
+0.1
+0.1
+0.3
+0.2
+0.2
carbon source
D-Glucose (C)
-0.0
+0.4
+0.3
+0.1
+0.2
nitrogen source
Casamino Acids (N)
-0.0
+0.3
+0.3
+0.3
+0.2
nitrogen source
L-Asparagine (N)
+0.4
+0.0
+0.4
+0.2
-0.0
carbon source
L-Proline (C)
-0.0
+0.2
+0.2
+0.3
+0.4
carbon source
D-Cellobiose (C)
+0.0
+0.3
+0.1
+0.3
+0.4
carbon source
a-Cyclodextrin (C)
-0.2
-0.1
+0.5
+0.3
+0.6
carbon source
pyruvate (C)
-0.2
-0.2
+0.3
+0.6
+0.6
nitrogen source
Glucuronamide (N)
-0.0
+0.1
+0.5
+0.3
+0.4
nitrogen source
L-Isoleucine (N)
-0.0
+0.2
+0.3
+0.4
+0.5
carbon source
NAG (C)
-0.2
-0.1
+0.5
+0.7
+0.6
carbon source
NAG (C)
-0.3
+0.0
+0.6
+0.6
+0.7
nitrogen source
N-Acetyl-D-glucosamine (N)
-0.4
-0.3
+1.0
+0.9
+0.9
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.4
+0.7
+0.7
+0.7
+0.9
carbon source
D-Galactose (C)
+0.1
+0.6
+1.0
+1.0
+0.9
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