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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS09005 and ABZR86_RS09010 are separated by 144 nucleotides
ABZR86_RS09010 and ABZR86_RS09015 overlap by 14 nucleotides
ABZR86_RS09015 and ABZR86_RS09020 are separated by 37 nucleotides
ABZR86_RS09020 and ABZR86_RS09025 are separated by 167 nucleotides
ABZR86_RS09005: ABZR86_RS09005 - metallophosphoesterase, at 2,006,665 to 2,007,615
_RS09005
ABZR86_RS09010: ABZR86_RS09010 - sigma-70 family RNA polymerase sigma factor, at 2,007,760 to 2,008,332
_RS09010
ABZR86_RS09015: ABZR86_RS09015 - anti-sigma factor, at 2,008,319 to 2,009,062
_RS09015
ABZR86_RS09020: ABZR86_RS09020 - YkgJ family cysteine cluster protein, at 2,009,100 to 2,009,468
_RS09020
ABZR86_RS09025: ABZR86_RS09025 - neutral zinc metallopeptidase, at 2,009,636 to 2,010,499
_RS09025
Group
Condition
ABZR86
_RS09005
ABZR86
_RS09010
ABZR86
_RS09015
ABZR86
_RS09020
ABZR86
_RS09025
carbon source
a-Cyclodextrin (C)
+0.0
+0.0
-2.3
-0.1
-0.2
carbon source
pyruvate (C)
-0.5
-0.1
-1.5
+0.3
-0.3
carbon source
L-Alanine (C)
-0.1
+0.1
-1.9
+0.0
-0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
-0.0
-1.4
-0.3
-0.1
carbon source
D-Maltose (C)
-0.1
+0.0
-1.2
-0.0
-0.5
carbon source
pyruvate (C)
+0.0
-0.0
-1.8
-0.2
+0.2
carbon source
D-Fructose (C)
-0.1
+0.1
-1.4
+0.1
-0.4
carbon source
NAG (C)
-0.0
+0.1
-1.6
+0.0
-0.1
carbon source
L-Alanine (C)
+0.0
+0.2
-1.6
-0.0
-0.1
stress
Spectinomycin 0.04 mg/ml
+0.3
-0.3
-1.0
-0.2
-0.2
carbon source
L-Proline (C)
+0.1
+0.3
-1.8
-0.0
+0.2
carbon source
NAG (C)
-0.2
+0.1
-1.2
+0.0
+0.0
stress
Sisomicin 0.016 mg/ml
+0.2
+0.0
-1.6
+0.4
-0.2
carbon source
a-Cyclodextrin (C)
+0.0
+0.0
-1.1
-0.2
+0.1
stress
Fusidic 0.2 mg/ml
-0.2
+0.1
-0.5
-0.2
-0.1
carbon source
D-Glucose (C)
+0.1
+0.1
-1.0
+0.2
-0.3
stress
Fusidic 0.4 mg/ml
-0.3
+0.2
-1.0
+0.1
+0.0
carbon source
D-Cellobiose (C)
+0.0
+0.1
-0.8
-0.4
+0.2
carbon source
D-Cellobiose (C)
-0.1
-0.0
-0.9
+0.4
-0.1
nitrogen source
L-Leucine (N)
+0.2
-0.1
-0.8
-0.1
-0.1
nitrogen source
N-Acetyl-D-glucosamine (N)
+0.0
+0.2
-1.0
+0.0
+0.0
carbon source
L-Proline (C)
-0.1
+0.2
-1.0
+0.2
+0.0
stress
D-Cycloserine 0.032 mg/ml
-0.1
+0.2
-0.6
-0.3
+0.1
carbon source
D-Galactose (C)
+0.4
+0.2
-1.3
+0.1
-0.0
carbon source
D-Glucose (C)
+0.0
+0.2
-1.0
+0.2
-0.0
stress
nitrite 6 mM
+0.1
+0.1
-0.7
+0.2
-0.0
carbon source
D-Fructose (C)
+0.2
+0.2
-1.1
+0.2
+0.2
stress
nitrate 200 mM
-0.1
-0.1
-0.6
+0.3
+0.3
nitrogen source
L-Asparagine (N)
+0.5
-0.3
-0.0
+0.5
-0.2
stress
Tetracycline 0.024 mg/ml
+0.4
-0.1
+0.5
+0.0
+0.2
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