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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS07380 and ABZR86_RS07385 are separated by 135 nucleotides
ABZR86_RS07385 and ABZR86_RS07390 are separated by 510 nucleotides
ABZR86_RS07390 and ABZR86_RS07395 are separated by 255 nucleotides
ABZR86_RS07395 and ABZR86_RS07400 are separated by 3 nucleotides
ABZR86_RS07380: ABZR86_RS07380 - metalloregulator ArsR/SmtB family transcription factor, at 1,621,718 to 1,622,161
_RS07380
ABZR86_RS07385: ABZR86_RS07385 - autotransporter-associated beta strand repeat-containing protein, at 1,622,297 to 1,628,095
_RS07385
ABZR86_RS07390: ABZR86_RS07390 - RidA family protein, at 1,628,606 to 1,629,079
_RS07390
ABZR86_RS07395: ABZR86_RS07395 - TonB-dependent siderophore receptor, at 1,629,335 to 1,631,563
_RS07395
ABZR86_RS07400: ABZR86_RS07400 - hypothetical protein, at 1,631,567 to 1,631,827
_RS07400
Group
Condition
ABZR86
_RS07380
ABZR86
_RS07385
ABZR86
_RS07390
ABZR86
_RS07395
ABZR86
_RS07400
stress
D-Cycloserine 0.032 mg/ml
-0.4
-0.0
-0.0
+0.0
-0.5
stress
Sisomicin 0.016 mg/ml
-0.3
-0.1
-0.2
-0.0
-0.2
stress
Chloramphenicol 0.012 mg/ml
-0.1
-0.1
-0.0
+0.0
-0.6
stress
Tetracycline 0.024 mg/ml
-1.0
-0.1
+0.1
+0.1
+0.1
stress
Nalidixic 0.08 mg/ml
+0.4
-0.1
+0.0
-0.2
-0.5
stress
Ceftazidime 0.1 mg/ml
-0.6
+0.0
+0.0
+0.0
+0.2
lb
LB
-0.6
-0.1
+0.1
-0.0
+0.3
carbon source
a-Cyclodextrin (C)
-0.3
-0.0
-0.1
+0.0
+0.5
stress
Chloramphenicol 0.008 mg/ml
+0.1
+0.1
+0.2
+0.0
-0.3
stress
Nalidixic 0.01 mg/ml
-0.2
+0.1
-0.1
+0.1
+0.5
stress
Fusidic 0.2 mg/ml
+0.3
+0.0
-0.1
-0.1
+0.3
stress
Carbenicillin 0.02 mg/ml
+1.0
-0.1
-0.2
-0.1
-0.1
stress
Zinc 2.5 mM
+0.8
+0.0
-0.1
+0.0
-0.1
stress
Chlorite 0.32 mM
+0.9
-0.0
-0.2
-0.1
+0.0
carbon source
L-Proline (C)
+0.3
+0.0
-0.1
+0.1
+0.4
stress
perchlorate 75 mM
+0.6
+0.0
+0.1
-0.1
+0.1
carbon source
D-Maltose (C)
+0.3
+0.1
+0.3
-0.0
+0.0
carbon source
D-Cellobiose (C)
+0.7
+0.1
+0.0
+0.0
+0.0
carbon source
D-Maltose (C)
+0.4
+0.1
-0.1
+0.1
+0.3
carbon source
pyruvate (C)
+0.2
+0.1
+0.3
+0.1
+0.3
stress
Nalidixic 0.02 mg/ml
+0.7
+0.1
+0.0
+0.1
+0.1
stress
A22 0.01 mg/ml
+0.8
+0.0
+0.0
+0.1
-0.0
nitrogen source
nitrate (N)
+0.4
+0.2
+0.1
+0.2
+0.3
carbon source
D-Glucose (C)
+0.3
+0.2
+0.2
+0.1
+0.3
nitrogen source
L-Isoleucine (N)
+0.4
+0.1
+0.1
+0.1
+0.4
carbon source
D-Glucose (C)
+0.5
+0.1
+0.1
+0.1
+0.5
stress
Tetracycline 0.012 mg/ml
+0.7
+0.1
+0.1
+0.1
+0.4
nitrogen source
Casamino Acids (N)
+0.8
+0.1
+0.2
+0.1
+0.2
nitrogen source
L-Arginine (N)
+0.9
+0.1
+0.0
+0.1
+0.3
carbon source
L-Alanine (C)
+0.9
+0.0
+0.3
+0.0
+0.3
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