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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS06470 and ABZR86_RS06475 are separated by 25 nucleotides
ABZR86_RS06475 and ABZR86_RS06480 are separated by 596 nucleotides
ABZR86_RS06480 and ABZR86_RS06485 overlap by 4 nucleotides
ABZR86_RS06485 and ABZR86_RS06490 overlap by 4 nucleotides
ABZR86_RS06470: ABZR86_RS06470 - cysteine dioxygenase family protein, at 1,435,626 to 1,436,210
_RS06470
ABZR86_RS06475: ABZR86_RS06475 - tRNA-Leu, at 1,436,236 to 1,436,321
_RS06475
ABZR86_RS06480: ABZR86_RS06480 - SIR2 family protein, at 1,436,918 to 1,438,621
_RS06480
ABZR86_RS06485: ABZR86_RS06485 - hypothetical protein, at 1,438,618 to 1,439,205
_RS06485
ABZR86_RS06490: ABZR86_RS06490 - AAA family ATPase, at 1,439,202 to 1,441,652
_RS06490
Group
Condition
ABZR86
_RS06470
ABZR86
_RS06475
ABZR86
_RS06480
ABZR86
_RS06485
ABZR86
_RS06490
stress
Tetracycline 0.024 mg/ml
-0.1
N.D.
+0.1
-0.4
+0.0
stress
Zinc 2.5 mM
-0.5
N.D.
+0.0
-0.1
+0.1
stress
Nalidixic 0.08 mg/ml
-0.2
N.D.
-0.1
+0.1
-0.0
lb
LB
-0.5
N.D.
+0.1
+0.2
+0.1
stress
Fusidic 0.2 mg/ml
+0.2
N.D.
+0.0
-0.1
-0.1
stress
Tetracycline 0.012 mg/ml
+0.1
N.D.
-0.0
+0.2
-0.1
carbon source
D-Fructose (C)
-0.2
N.D.
+0.1
+0.1
+0.1
stress
Chloramphenicol 0.008 mg/ml
-0.1
N.D.
+0.1
+0.3
-0.0
stress
Paraquat dichloride 0.2 mg/ml
+0.2
N.D.
-0.1
+0.1
-0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.2
N.D.
+0.1
+0.2
-0.1
carbon source
a-Cyclodextrin (C)
+0.1
N.D.
-0.1
+0.2
+0.1
carbon source
D-Cellobiose (C)
+0.1
N.D.
-0.1
+0.2
+0.2
carbon source
D-Maltose (C)
+0.2
N.D.
-0.0
+0.0
+0.2
stress
Spectinomycin 0.04 mg/ml
+0.2
N.D.
-0.1
+0.0
+0.2
stress
Ceftazidime 0.05 mg/ml
+0.2
N.D.
-0.0
+0.3
+0.0
lb
LB
+0.0
N.D.
-0.1
+0.4
+0.1
stress
nitrite 6 mM
+0.2
N.D.
+0.1
+0.1
+0.0
stress
Paraquat dichloride 0.1 mg/ml
+0.3
N.D.
+0.0
+0.0
+0.1
stress
Fusidic 0.4 mg/ml
+0.1
N.D.
+0.1
+0.1
+0.2
carbon source
L-Proline (C)
+0.1
N.D.
-0.0
+0.1
+0.3
nitrogen source
L-Arginine (N)
+0.3
N.D.
+0.1
+0.1
-0.0
carbon source
pyruvate (C)
+0.1
N.D.
+0.1
+0.2
+0.0
carbon source
NAG (C)
-0.0
N.D.
+0.0
+0.3
+0.2
carbon source
D-Galactose (C)
+0.2
N.D.
+0.0
+0.1
+0.2
carbon source
L-Alanine (C)
+0.2
N.D.
-0.0
+0.2
+0.2
nitrogen source
Casamino Acids (N)
+0.2
N.D.
+0.1
+0.2
+0.1
stress
Thallium(I) acetate 0.016 mg/ml
+0.2
N.D.
+0.0
+0.3
+0.0
nitrogen source
L-Isoleucine (N)
+0.3
N.D.
-0.0
+0.2
+0.1
nitrogen source
L-Asparagine (N)
+0.1
N.D.
+0.4
+0.2
+0.3
nitrogen source
L-Lysine (N)
+0.4
N.D.
+0.2
+0.3
+0.1
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