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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS06015 and ABZR86_RS06020 overlap by 1 nucleotides
ABZR86_RS06020 and ABZR86_RS06025 are separated by 146 nucleotides
ABZR86_RS06025 and ABZR86_RS06030 are separated by 126 nucleotides
ABZR86_RS06030 and ABZR86_RS06035 are separated by 48 nucleotides
ABZR86_RS06015: ABZR86_RS06015 - tRNA pseudouridine(55) synthase TruB, at 1,351,120 to 1,352,049
_RS06015
ABZR86_RS06020: ABZR86_RS06020 - 30S ribosome-binding factor RbfA, at 1,352,049 to 1,352,447
_RS06020
ABZR86_RS06025: ABZR86_RS06025 - translation initiation factor IF-2, at 1,352,594 to 1,355,401
_RS06025
ABZR86_RS06030: ABZR86_RS06030 - transcription termination factor NusA, at 1,355,528 to 1,357,027
_RS06030
ABZR86_RS06035: ABZR86_RS06035 - ribosome maturation factor RimP, at 1,357,076 to 1,357,588
_RS06035
Group
Condition
ABZR86
_RS06015
ABZR86
_RS06020
ABZR86
_RS06025
ABZR86
_RS06030
ABZR86
_RS06035
stress
Fusidic 0.2 mg/ml
-0.2
N.D.
N.D.
-5.3
N.D.
lb
LB
-0.3
N.D.
N.D.
-5.2
N.D.
stress
Fusidic 0.4 mg/ml
+0.2
N.D.
N.D.
-4.4
N.D.
carbon source
D-Fructose (C)
+0.3
N.D.
N.D.
-3.8
N.D.
carbon source
a-Cyclodextrin (C)
+0.2
N.D.
N.D.
-2.7
N.D.
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.0
N.D.
N.D.
-2.5
N.D.
lb
LB
+0.0
N.D.
N.D.
-2.3
N.D.
nitrogen source
N-Acetyl-D-glucosamine (N)
+0.1
N.D.
N.D.
-2.4
N.D.
stress
Nalidixic 0.02 mg/ml
-0.1
N.D.
N.D.
-2.2
N.D.
carbon source
pyruvate (C)
+0.1
N.D.
N.D.
-2.4
N.D.
carbon source
L-Proline (C)
+0.3
N.D.
N.D.
-2.6
N.D.
stress
Zinc 2.5 mM
+0.2
N.D.
N.D.
-2.5
N.D.
carbon source
D-Galactose (C)
+0.5
N.D.
N.D.
-2.7
N.D.
carbon source
D-Glucose (C)
-0.3
N.D.
N.D.
-1.8
N.D.
stress
perchlorate 75 mM
-0.3
N.D.
N.D.
-1.9
N.D.
carbon source
NAG (C)
+0.6
N.D.
N.D.
-2.6
N.D.
stress
Nalidixic 0.04 mg/ml
+0.1
N.D.
N.D.
-2.1
N.D.
carbon source
D-Cellobiose (C)
-0.1
N.D.
N.D.
-1.9
N.D.
stress
Spectinomycin 0.04 mg/ml
-1.3
N.D.
N.D.
-0.6
N.D.
stress
Paraquat dichloride 0.1 mg/ml
+0.1
N.D.
N.D.
-2.0
N.D.
nitrogen source
L-Isoleucine (N)
+0.1
N.D.
N.D.
-1.9
N.D.
carbon source
D-Maltose (C)
+0.1
N.D.
N.D.
-1.8
N.D.
stress
Nalidixic 0.01 mg/ml
-0.2
N.D.
N.D.
-1.5
N.D.
stress
Dimethyl Sulfoxide 7.5 vol%
+0.1
N.D.
N.D.
-1.7
N.D.
carbon source
D-Maltose (C)
+0.1
N.D.
N.D.
-1.7
N.D.
stress
Chloride 250 mM
+0.1
N.D.
N.D.
-1.5
N.D.
carbon source
NAG (C)
+0.2
N.D.
N.D.
-1.5
N.D.
carbon source
pyruvate (C)
+0.5
N.D.
N.D.
-1.6
N.D.
carbon source
L-Alanine (C)
+0.7
N.D.
N.D.
-1.0
N.D.
stress
Sisomicin 0.016 mg/ml
+1.6
N.D.
N.D.
-0.2
N.D.
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