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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS05620 and ABZR86_RS05625 overlap by 16 nucleotides
ABZR86_RS05625 and ABZR86_RS05630 overlap by 4 nucleotides
ABZR86_RS05630 and ABZR86_RS05635 are separated by 20 nucleotides
ABZR86_RS05635 and ABZR86_RS05640 are separated by 263 nucleotides
ABZR86_RS05620: ABZR86_RS05620 - prolipoprotein diacylglyceryl transferase family protein, at 1,270,761 to 1,271,510
_RS05620
ABZR86_RS05625: ABZR86_RS05625 - radical SAM protein, at 1,271,495 to 1,272,931
_RS05625
ABZR86_RS05630: ABZR86_RS05630 - hypothetical protein, at 1,272,928 to 1,273,269
_RS05630
ABZR86_RS05635: ABZR86_RS05635 - sodium:calcium antiporter, at 1,273,290 to 1,274,291
_RS05635
ABZR86_RS05640: ABZR86_RS05640 - 4-hydroxy-tetrahydrodipicolinate reductase, at 1,274,555 to 1,275,355
_RS05640
Group
Condition
ABZR86
_RS05620
ABZR86
_RS05625
ABZR86
_RS05630
ABZR86
_RS05635
ABZR86
_RS05640
carbon source
D-Galactose (C)
-0.1
+0.0
N.D.
-4.8
N.D.
carbon source
L-Alanine (C)
+0.0
+0.1
N.D.
-4.2
N.D.
carbon source
L-Alanine (C)
-0.1
-0.1
N.D.
-3.6
N.D.
carbon source
NAG (C)
-0.0
-0.0
N.D.
-2.6
N.D.
carbon source
NAG (C)
-0.0
+0.1
N.D.
-2.7
N.D.
nitrogen source
N-Acetyl-D-glucosamine (N)
-0.3
-0.1
N.D.
-2.1
N.D.
carbon source
pyruvate (C)
-0.2
+0.0
N.D.
-1.1
N.D.
lb
LB
-0.3
+0.1
N.D.
-1.1
N.D.
carbon source
a-Cyclodextrin (C)
+0.1
+0.1
N.D.
-1.3
N.D.
carbon source
a-Cyclodextrin (C)
+0.0
+0.0
N.D.
-1.2
N.D.
carbon source
D-Maltose (C)
-0.1
-0.1
N.D.
-1.0
N.D.
carbon source
pyruvate (C)
-0.1
+0.1
N.D.
-1.0
N.D.
carbon source
D-Maltose (C)
+0.1
-0.1
N.D.
-1.1
N.D.
carbon source
L-Proline (C)
+0.1
+0.1
N.D.
-1.1
N.D.
nitrogen source
L-Asparagine (N)
-0.0
-0.2
N.D.
-0.7
N.D.
carbon source
D-Fructose (C)
-0.1
+0.1
N.D.
-0.8
N.D.
carbon source
L-Proline (C)
+0.1
+0.1
N.D.
-0.9
N.D.
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.2
-0.0
N.D.
-0.8
N.D.
carbon source
D-Cellobiose (C)
-0.0
-0.0
N.D.
-0.7
N.D.
carbon source
D-Glucose (C)
+0.0
-0.1
N.D.
-0.6
N.D.
stress
Sisomicin 0.016 mg/ml
-0.2
-0.0
N.D.
-0.5
N.D.
nitrogen source
L-Arginine (N)
-0.2
+0.0
N.D.
-0.4
N.D.
nitrogen source
Casamino Acids (N)
+0.1
+0.0
N.D.
-0.7
N.D.
lb
LB
+0.1
-0.2
N.D.
-0.3
N.D.
carbon source
D-Glucose (C)
+0.0
+0.2
N.D.
-0.6
N.D.
stress
Zinc 2.5 mM
+0.1
+0.1
N.D.
-0.4
N.D.
stress
Ceftazidime 0.1 mg/ml
+0.2
+0.1
N.D.
-0.3
N.D.
stress
D-Cycloserine 0.032 mg/ml
-0.0
+0.1
N.D.
+0.6
N.D.
stress
Chlorite 0.32 mM
-0.1
+0.1
N.D.
+1.0
N.D.
stress
Tetracycline 0.024 mg/ml
-0.0
-0.1
N.D.
+1.3
N.D.
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