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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS04540 and ABZR86_RS04545 are separated by 144 nucleotides
ABZR86_RS04545 and ABZR86_RS04550 are separated by 123 nucleotides
ABZR86_RS04550 and ABZR86_RS04555 are separated by 72 nucleotides
ABZR86_RS04555 and ABZR86_RS04560 are separated by 68 nucleotides
ABZR86_RS04540: ABZR86_RS04540 - tRNA-Sec, at 1,020,706 to 1,020,802
_RS04540
ABZR86_RS04545: ABZR86_RS04545 - selenide, water dikinase SelD, at 1,020,947 to 1,021,987
_RS04545
ABZR86_RS04550: ABZR86_RS04550 - endonuclease/exonuclease/phosphatase family protein, at 1,022,111 to 1,022,941
_RS04550
ABZR86_RS04555: ABZR86_RS04555 - methyltransferase domain-containing protein, at 1,023,014 to 1,023,868
_RS04555
ABZR86_RS04560: ABZR86_RS04560 - H-NS histone family protein, at 1,023,937 to 1,024,410
_RS04560
Group
Condition
ABZR86
_RS04540
ABZR86
_RS04545
ABZR86
_RS04550
ABZR86
_RS04555
ABZR86
_RS04560
stress
Tetracycline 0.012 mg/ml
N.D.
+0.0
-0.2
+0.0
-0.4
stress
nitrite 6 mM
N.D.
-0.0
-0.1
-0.1
-0.3
stress
sodium fluoride 40 mM
N.D.
-0.1
-0.0
+0.1
-0.4
carbon source
a-Cyclodextrin (C)
N.D.
-0.1
-0.1
-0.0
-0.3
stress
sodium fluoride 60 mM
N.D.
-0.0
-0.0
+0.1
-0.5
nitrogen source
L-Leucine (N)
N.D.
+0.0
-0.1
+0.0
-0.4
nitrogen source
L-Arginine (N)
N.D.
+0.1
-0.0
+0.1
-0.6
stress
Fusidic 0.4 mg/ml
N.D.
+0.1
-0.4
+0.0
-0.1
stress
Spectinomycin 0.04 mg/ml
N.D.
+0.1
+0.1
-0.1
-0.5
stress
Dimethyl Sulfoxide 7.5 vol%
N.D.
+0.1
-0.1
+0.0
-0.4
stress
nitrate 200 mM
N.D.
+0.1
-0.2
+0.1
-0.2
stress
Nalidixic 0.02 mg/ml
N.D.
-0.1
+0.2
+0.0
-0.4
stress
Chloride 250 mM
N.D.
+0.1
-0.2
-0.0
-0.2
stress
nitrate 150 mM
N.D.
+0.1
-0.1
+0.1
-0.3
carbon source
L-Proline (C)
N.D.
+0.1
-0.1
+0.0
-0.3
stress
Fusidic 0.2 mg/ml
N.D.
+0.0
+0.1
+0.2
-0.4
carbon source
a-Cyclodextrin (C)
N.D.
-0.2
+0.1
+0.1
-0.2
carbon source
D-Cellobiose (C)
N.D.
-0.2
+0.0
-0.1
+0.1
stress
Ceftazidime 0.05 mg/ml
N.D.
+0.1
+0.2
+0.1
-0.5
stress
Paraquat dichloride 0.05 mg/ml
N.D.
+0.1
-0.0
+0.2
-0.2
nitrogen source
L-Proline (N)
N.D.
+0.2
-0.3
+0.1
+0.2
carbon source
pyruvate (C)
N.D.
-0.2
+0.2
-0.1
+0.3
stress
perchlorate 75 mM
N.D.
+0.2
-0.2
-0.0
+0.2
stress
Chloramphenicol 0.008 mg/ml
N.D.
+0.1
-0.1
+0.1
+0.2
lb
LB
N.D.
+0.1
-0.2
-0.1
+0.3
carbon source
D-Fructose (C)
N.D.
+0.0
-0.1
+0.0
+0.3
nitrogen source
L-Isoleucine (N)
N.D.
-0.1
-0.2
+0.0
+0.5
stress
Sisomicin 0.016 mg/ml
N.D.
+0.1
-0.1
+0.1
+0.2
stress
Nalidixic 0.08 mg/ml
N.D.
-0.0
+0.4
+0.1
-0.1
lb
LB
N.D.
-0.0
-0.0
-0.0
+0.4
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