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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS03515 and ABZR86_RS03520 are separated by 50 nucleotides
ABZR86_RS03520 and ABZR86_RS03525 are separated by 107 nucleotides
ABZR86_RS03525 and ABZR86_RS03530 overlap by 4 nucleotides
ABZR86_RS03530 and ABZR86_RS03535 are separated by 301 nucleotides
ABZR86_RS03515: ABZR86_RS03515 - nucleotidyltransferase family protein, at 751,782 to 752,381
_RS03515
ABZR86_RS03520: ABZR86_RS03520 - (2Fe-2S)-binding protein, at 752,432 to 752,869
_RS03520
ABZR86_RS03525: ABZR86_RS03525 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 752,977 to 755,247
_RS03525
ABZR86_RS03530: ABZR86_RS03530 - cytochrome c, at 755,244 to 756,569
_RS03530
ABZR86_RS03535: ABZR86_RS03535 - GTP 3',8-cyclase MoaA, at 756,871 to 757,854
_RS03535
Group
Condition
ABZR86
_RS03515
ABZR86
_RS03520
ABZR86
_RS03525
ABZR86
_RS03530
ABZR86
_RS03535
carbon source
D-Fructose (C)
-0.4
-0.5
-0.3
-0.2
-0.9
nitrogen source
nitrate (N)
+0.0
-0.2
+0.2
+0.2
-2.4
carbon source
D-Fructose (C)
-0.9
-0.1
-0.4
-0.1
-0.9
nitrogen source
L-Lysine (N)
-0.0
-0.4
-0.2
-0.0
-0.9
nitrogen source
N-Acetyl-D-glucosamine (N)
-0.2
-0.4
-0.0
-0.0
-0.6
carbon source
a-Cyclodextrin (C)
-0.5
-0.0
-0.2
-0.1
-0.4
lb
LB
-0.3
-0.5
-0.1
-0.1
-0.3
carbon source
D-Glucose (C)
-0.3
-0.1
-0.1
-0.1
-0.4
carbon source
L-Proline (C)
-0.0
+0.1
-0.1
-0.0
-0.9
stress
Chlorite 0.32 mM
-0.1
+0.0
-0.2
-0.0
-0.6
stress
Dimethyl Sulfoxide 7.5 vol%
-0.2
-0.2
-0.0
-0.0
-0.3
stress
nitrate 150 mM
-0.1
+0.1
+0.1
+0.1
-0.9
carbon source
NAG (C)
-0.2
-0.2
-0.1
-0.1
-0.3
stress
Zinc 2.5 mM
+0.2
-0.4
-0.1
-0.1
-0.5
carbon source
pyruvate (C)
-0.4
+0.1
-0.1
-0.1
-0.2
carbon source
D-Cellobiose (C)
-0.3
-0.2
-0.2
-0.1
+0.2
stress
Spectinomycin 0.04 mg/ml
-0.2
-0.6
+0.1
-0.0
+0.2
carbon source
L-Alanine (C)
+0.1
+0.3
-0.2
-0.0
-0.7
stress
Nalidixic 0.08 mg/ml
+0.4
-0.3
+0.1
-0.1
-0.6
carbon source
D-Glucose (C)
-0.3
+0.4
-0.2
-0.1
-0.3
stress
A22 0.02 mg/ml
+0.0
+0.3
-0.1
-0.0
-0.5
stress
D-Cycloserine 0.032 mg/ml
-0.0
+0.2
-0.0
+0.1
-0.5
nitrogen source
L-Arginine (N)
+0.2
+0.4
-0.1
-0.1
-0.7
carbon source
a-Cyclodextrin (C)
-0.4
+0.3
-0.2
-0.1
+0.3
nitrogen source
L-Asparagine (N)
+0.4
-0.0
+0.2
-0.2
-0.4
carbon source
NAG (C)
+0.1
+0.3
-0.2
-0.0
-0.2
stress
Tetracycline 0.024 mg/ml
+0.2
-0.6
+0.1
+0.0
+0.5
carbon source
D-Maltose (C)
-0.3
+0.3
-0.1
-0.0
+0.4
stress
Ceftazidime 0.05 mg/ml
-0.1
+0.1
+0.1
-0.1
+0.6
stress
Chloramphenicol 0.012 mg/ml
+0.2
+0.5
+0.1
-0.1
+0.7
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