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Cofit
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS01940 and ABZR86_RS01945 are separated by 22 nucleotides
ABZR86_RS01945 and ABZR86_RS01950 are separated by 13 nucleotides
ABZR86_RS01950 and ABZR86_RS01955 are separated by 165 nucleotides
ABZR86_RS01955 and ABZR86_RS01960 are separated by 565 nucleotides
ABZR86_RS01940: ABZR86_RS01940 - triose-phosphate isomerase, at 421,108 to 421,857
_RS01940
ABZR86_RS01945: ABZR86_RS01945 - preprotein translocase subunit SecG, at 421,880 to 422,335
_RS01945
ABZR86_RS01950: ABZR86_RS01950 - tRNA-Leu, at 422,349 to 422,433
_RS01950
ABZR86_RS01955: ABZR86_RS01955 - integrase arm-type DNA-binding domain-containing protein, at 422,599 to 423,900
_RS01955
ABZR86_RS01960: ABZR86_RS01960 - type II toxin-antitoxin system HicA family toxin, at 424,466 to 424,663
_RS01960
Group
Condition
ABZR86
_RS01940
ABZR86
_RS01945
ABZR86
_RS01950
ABZR86
_RS01955
ABZR86
_RS01960
stress
Sisomicin 0.016 mg/ml
N.D.
-4.1
N.D.
+0.2
+0.0
stress
Zinc 2.5 mM
N.D.
-3.3
N.D.
-0.1
+0.1
stress
Paraquat dichloride 0.1 mg/ml
N.D.
-1.7
N.D.
+0.0
+0.1
carbon source
a-Cyclodextrin (C)
N.D.
-0.9
N.D.
+0.1
-0.2
stress
Paraquat dichloride 0.05 mg/ml
N.D.
-1.0
N.D.
+0.1
-0.0
stress
Fusidic 0.4 mg/ml
N.D.
-1.0
N.D.
+0.0
+0.1
lb
LB
N.D.
-1.1
N.D.
+0.2
+0.1
stress
A22 0.01 mg/ml
N.D.
-1.0
N.D.
-0.0
+0.2
carbon source
D-Glucose (C)
N.D.
-0.9
N.D.
+0.1
+0.0
stress
Thallium(I) acetate 0.008 mg/ml
N.D.
-0.8
N.D.
+0.1
+0.0
stress
Tetracycline 0.024 mg/ml
N.D.
-0.6
N.D.
+0.0
-0.0
stress
Chloramphenicol 0.008 mg/ml
N.D.
-0.9
N.D.
+0.1
+0.2
stress
D-Cycloserine 0.032 mg/ml
N.D.
-0.8
N.D.
+0.1
+0.2
stress
nitrate 200 mM
N.D.
-0.8
N.D.
+0.1
+0.1
nitrogen source
L-Asparagine (N)
N.D.
-0.7
N.D.
-0.0
+0.1
stress
A22 0.02 mg/ml
N.D.
-0.7
N.D.
+0.1
+0.1
stress
sodium fluoride 60 mM
N.D.
-0.6
N.D.
+0.0
+0.1
lb
LB
N.D.
-0.7
N.D.
+0.2
+0.1
stress
nitrite 6 mM
N.D.
-0.4
N.D.
-0.0
+0.2
stress
Ceftazidime 0.1 mg/ml
N.D.
-0.3
N.D.
+0.1
+0.3
carbon source
L-Alanine (C)
N.D.
+0.6
N.D.
-0.0
-0.2
nitrogen source
L-Lysine (N)
N.D.
+0.5
N.D.
-0.0
+0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
N.D.
+0.4
N.D.
+0.1
+0.2
stress
Nalidixic 0.01 mg/ml
N.D.
+0.7
N.D.
-0.0
-0.1
carbon source
L-Proline (C)
N.D.
+0.8
N.D.
+0.0
-0.1
carbon source
L-Proline (C)
N.D.
+0.6
N.D.
+0.1
+0.0
stress
Nalidixic 0.02 mg/ml
N.D.
+0.7
N.D.
+0.0
+0.1
stress
Nalidixic 0.08 mg/ml
N.D.
+1.8
N.D.
-0.1
+0.1
stress
Nalidixic 0.04 mg/ml
N.D.
+2.1
N.D.
+0.0
+0.2
stress
Chlorite 0.32 mM
N.D.
+2.0
N.D.
+0.1
+0.3
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