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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS01400 and ABZR86_RS01405 are separated by 87 nucleotides
ABZR86_RS01405 and ABZR86_RS01410 overlap by 1 nucleotides
ABZR86_RS01410 and ABZR86_RS01415 are separated by 365 nucleotides
ABZR86_RS01415 and ABZR86_RS01420 overlap by 8 nucleotides
ABZR86_RS01400: ABZR86_RS01400 - Lrp/AsnC family transcriptional regulator, at 301,352 to 301,825
_RS01400
ABZR86_RS01405: ABZR86_RS01405 - helix-turn-helix domain-containing protein, at 301,913 to 302,569
_RS01405
ABZR86_RS01410: ABZR86_RS01410 - hypothetical protein, at 302,569 to 303,219
_RS01410
ABZR86_RS01415: ABZR86_RS01415 - histidine kinase, at 303,585 to 304,829
_RS01415
ABZR86_RS01420: ABZR86_RS01420 - LytTR family DNA-binding domain-containing protein, at 304,822 to 305,589
_RS01420
Group
Condition
ABZR86
_RS01400
ABZR86
_RS01405
ABZR86
_RS01410
ABZR86
_RS01415
ABZR86
_RS01420
carbon source
L-Alanine (C)
-2.1
+0.0
+0.2
-0.1
-0.0
carbon source
L-Alanine (C)
-2.0
-0.0
+0.1
+0.1
+0.1
stress
Fusidic 0.4 mg/ml
+0.0
-0.5
-0.2
+0.1
-0.1
stress
D-Cycloserine 0.032 mg/ml
+0.1
-0.1
-0.1
-0.2
-0.3
carbon source
D-Maltose (C)
-0.1
-0.2
+0.2
+0.0
-0.3
stress
Spectinomycin 0.04 mg/ml
-0.2
-0.0
+0.1
-0.3
+0.0
nitrogen source
L-Asparagine (N)
+0.6
-0.1
-0.5
+0.3
-0.6
stress
Zinc 2.5 mM
+0.1
+0.3
-0.6
+0.3
-0.2
stress
Fusidic 0.2 mg/ml
+0.2
+0.0
-0.4
+0.1
-0.1
stress
Chlorite 0.32 mM
+0.0
-0.1
-0.1
-0.2
+0.3
carbon source
a-Cyclodextrin (C)
+0.2
+0.0
-0.2
-0.2
+0.1
stress
Ceftazidime 0.1 mg/ml
+0.2
-0.1
+0.2
-0.3
+0.1
stress
Sisomicin 0.016 mg/ml
+0.3
-0.3
+0.0
-0.0
-0.1
stress
Paraquat dichloride 0.05 mg/ml
-0.1
-0.1
+0.2
+0.3
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
-0.4
+0.1
+0.4
+0.2
-0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.5
-0.1
+0.0
-0.1
-0.2
stress
sodium fluoride 40 mM
-0.2
+0.1
+0.4
+0.1
-0.2
carbon source
D-Fructose (C)
+0.0
-0.1
-0.2
+0.3
+0.2
nitrogen source
L-Isoleucine (N)
-0.0
+0.1
+0.3
+0.2
-0.3
lb
LB
-0.0
+0.2
+0.3
-0.2
-0.0
carbon source
L-Proline (C)
+0.0
+0.2
-0.1
-0.0
+0.3
stress
Thallium(I) acetate 0.016 mg/ml
+0.3
+0.1
+0.2
-0.1
+0.0
nitrogen source
Glucuronamide (N)
+0.2
+0.2
+0.1
-0.1
+0.0
lb
LB
+0.3
-0.2
+0.1
+0.0
+0.2
nitrogen source
L-Arginine (N)
+0.1
+0.1
+0.3
-0.2
+0.2
carbon source
pyruvate (C)
-0.1
-0.1
+0.3
+0.3
+0.2
carbon source
D-Cellobiose (C)
-0.2
-0.2
+0.5
+0.3
+0.2
nitrogen source
nitrate (N)
+0.3
-0.0
+0.4
-0.0
+0.2
stress
Carbenicillin 0.04 mg/ml
+0.1
+0.4
+0.4
-0.1
-0.0
stress
Nalidixic 0.04 mg/ml
+0.4
-0.0
+0.3
+0.3
-0.0
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