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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS00295 and ABZR86_RS00300 are separated by 13 nucleotides
ABZR86_RS00300 and ABZR86_RS00305 are separated by 110 nucleotides
ABZR86_RS00305 and ABZR86_RS00310 are separated by 108 nucleotides
ABZR86_RS00310 and ABZR86_RS00315 are separated by 118 nucleotides
ABZR86_RS00295: ABZR86_RS00295 - GyrI-like domain-containing protein, at 55,321 to 55,464
_RS00295
ABZR86_RS00300: ABZR86_RS00300 - DUF3772 domain-containing protein, at 55,478 to 57,922
_RS00300
ABZR86_RS00305: ABZR86_RS00305 - deoxyribonuclease V, at 58,033 to 58,713
_RS00305
ABZR86_RS00310: ABZR86_RS00310 - AraC family transcriptional regulator, at 58,822 to 59,736
_RS00310
ABZR86_RS00315: ABZR86_RS00315 - carboxymuconolactone decarboxylase family protein, at 59,855 to 60,199
_RS00315
Group
Condition
ABZR86
_RS00295
ABZR86
_RS00300
ABZR86
_RS00305
ABZR86
_RS00310
ABZR86
_RS00315
nitrogen source
L-Lysine (N)
N.D.
-0.4
-0.4
-1.2
-0.3
carbon source
D-Fructose (C)
N.D.
-0.2
-0.0
-1.4
-0.6
nitrogen source
nitrate (N)
N.D.
-0.4
-0.2
-0.9
-0.4
carbon source
NAG (C)
N.D.
-0.3
-0.3
-0.9
-0.4
carbon source
D-Glucose (C)
N.D.
-0.3
-0.4
-0.5
-0.7
nitrogen source
L-Arginine (N)
N.D.
-0.1
-0.2
-1.2
-0.2
carbon source
pyruvate (C)
N.D.
-0.3
-0.2
-0.6
-0.4
nitrogen source
Casamino Acids (N)
N.D.
-0.1
+0.1
-1.4
+0.1
stress
Thallium(I) acetate 0.016 mg/ml
N.D.
-0.5
-0.3
-0.0
-0.3
carbon source
D-Maltose (C)
N.D.
-0.3
-0.4
+0.2
-0.4
stress
Dimethyl Sulfoxide 7.5 vol%
N.D.
+0.1
+0.1
-1.2
+0.3
stress
Ceftazidime 0.05 mg/ml
N.D.
-0.3
+0.1
-0.5
+0.2
stress
Carbenicillin 0.04 mg/ml
N.D.
+0.2
+0.2
-0.8
+0.2
stress
perchlorate 75 mM
N.D.
+0.3
+0.3
-0.4
-0.2
stress
Chloramphenicol 0.008 mg/ml
N.D.
+0.3
+0.2
-0.7
+0.3
stress
A22 0.01 mg/ml
N.D.
+0.4
+0.1
-0.6
+0.3
stress
Chlorite 0.32 mM
N.D.
+0.2
+0.3
-0.5
+0.2
lb
LB
N.D.
+0.1
+0.4
-1.0
+0.7
stress
Tetracycline 0.012 mg/ml
N.D.
+0.3
+0.2
-0.5
+0.1
stress
sodium fluoride 40 mM
N.D.
+0.4
+0.1
-0.4
+0.3
stress
Paraquat dichloride 0.05 mg/ml
N.D.
+0.4
+0.3
-0.4
+0.3
stress
A22 0.02 mg/ml
N.D.
+0.4
+0.1
-0.3
+0.3
carbon source
D-Fructose (C)
N.D.
-0.1
-0.2
+0.7
+0.2
carbon source
L-Alanine (C)
N.D.
+0.3
+0.1
+0.4
-0.2
stress
Tetracycline 0.024 mg/ml
N.D.
+0.4
-0.1
-0.1
+0.5
stress
Thallium(I) acetate 0.008 mg/ml
N.D.
+0.5
+0.1
-0.2
+0.2
carbon source
NAG (C)
N.D.
+0.3
+0.1
+0.7
+0.2
stress
Nalidixic 0.08 mg/ml
N.D.
+0.5
+0.6
-0.1
+0.5
carbon source
L-Proline (C)
N.D.
+0.3
+0.3
+0.8
+0.3
stress
Spectinomycin 0.04 mg/ml
N.D.
+0.6
+0.2
+0.2
+0.7
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