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Cofit
Protein
Homologs
Fitness for 5 genes in
Dyella japonica UNC79MFTsu3.2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR86_RS00210 and ABZR86_RS00215 are separated by 124 nucleotides
ABZR86_RS00215 and ABZR86_RS00220 are separated by 188 nucleotides
ABZR86_RS00220 and ABZR86_RS00225 are separated by 314 nucleotides
ABZR86_RS00225 and ABZR86_RS00230 are separated by 4 nucleotides
ABZR86_RS00210: ABZR86_RS00210 - VOC family protein, at 37,814 to 38,308
_RS00210
ABZR86_RS00215: ABZR86_RS00215 - biopolymer transporter ExbD, at 38,433 to 38,825
_RS00215
ABZR86_RS00220: ABZR86_RS00220 - DUF3014 domain-containing protein, at 39,014 to 39,889
_RS00220
ABZR86_RS00225: ABZR86_RS00225 - multidrug effflux MFS transporter, at 40,204 to 41,412
_RS00225
ABZR86_RS00230: ABZR86_RS00230 - hypothetical protein, at 41,417 to 41,914
_RS00230
Group
Condition
ABZR86
_RS00210
ABZR86
_RS00215
ABZR86
_RS00220
ABZR86
_RS00225
ABZR86
_RS00230
stress
Tetracycline 0.012 mg/ml
+0.5
N.D.
+0.8
-5.7
+0.1
stress
Tetracycline 0.024 mg/ml
+1.2
N.D.
+1.9
-6.4
+0.1
carbon source
pyruvate (C)
-0.1
N.D.
-0.1
-0.1
-1.1
nitrogen source
nitrate (N)
-0.4
N.D.
-0.0
-0.1
-0.9
carbon source
NAG (C)
-0.3
N.D.
-0.1
-0.2
-0.4
carbon source
a-Cyclodextrin (C)
-0.1
N.D.
-0.3
-0.2
-0.3
carbon source
D-Glucose (C)
-0.2
N.D.
-0.2
-0.0
-0.5
carbon source
L-Proline (C)
-0.3
N.D.
-0.1
-0.1
-0.2
stress
Thallium(I) acetate 0.016 mg/ml
-0.4
N.D.
-0.2
-0.4
+0.3
stress
Chloramphenicol 0.012 mg/ml
+0.1
N.D.
+0.4
-0.7
-0.3
stress
Ceftazidime 0.1 mg/ml
-0.3
N.D.
-0.2
-0.2
+0.2
carbon source
D-Fructose (C)
-0.1
N.D.
-0.5
+0.2
-0.1
carbon source
a-Cyclodextrin (C)
+0.1
N.D.
-0.0
+0.3
-0.6
carbon source
D-Cellobiose (C)
-0.2
N.D.
-0.3
+0.1
+0.2
carbon source
L-Alanine (C)
-0.3
N.D.
-0.1
+0.1
+0.2
stress
Fusidic 0.4 mg/ml
+0.6
N.D.
+1.0
-0.7
-0.7
stress
nitrate 200 mM
+0.2
N.D.
+0.2
-0.2
+0.2
stress
Sisomicin 0.016 mg/ml
+0.2
N.D.
+0.5
-0.3
-0.1
stress
perchlorate 75 mM
+0.1
N.D.
+0.4
-0.2
+0.2
stress
sodium fluoride 40 mM
-0.1
N.D.
+0.3
-0.1
+0.3
stress
Chlorite 0.32 mM
-0.2
N.D.
+0.0
+0.3
+0.4
stress
Chloramphenicol 0.008 mg/ml
+0.4
N.D.
+0.2
-0.5
+0.5
lb
LB
+0.5
N.D.
+0.4
+0.2
-0.5
stress
Fusidic 0.2 mg/ml
+0.4
N.D.
+0.7
-0.4
-0.0
nitrogen source
L-Asparagine (N)
+0.3
N.D.
-0.3
+0.1
+0.6
stress
Carbenicillin 0.04 mg/ml
+0.1
N.D.
+0.1
+0.1
+0.5
stress
Nalidixic 0.08 mg/ml
-0.3
N.D.
+0.1
+0.4
+0.7
lb
LB
+0.2
N.D.
+0.2
+0.1
+0.4
stress
D-Cycloserine 0.032 mg/ml
+0.1
N.D.
+0.3
+0.2
+0.3
stress
sodium fluoride 60 mM
+0.1
N.D.
+0.1
+0.1
+0.6
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