Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006575 and ABIE53_006576 are separated by 353 nucleotidesABIE53_006576 and ABIE53_006577 are separated by 231 nucleotidesABIE53_006577 and ABIE53_004961 are separated by 219 nucleotidesABIE53_004961 and ABIE53_004962 are separated by 211 nucleotides ABIE53_006575: ABIE53_006575 - tRNA-Ala, at 1,190,476 to 1,190,551 _006575 ABIE53_006576: ABIE53_006576 - 23S ribosomal RNA, at 1,190,905 to 1,193,787 _006576 ABIE53_006577: ABIE53_006577 - 5S ribosomal RNA, at 1,194,019 to 1,194,132 _006577 ABIE53_004961: ABIE53_004961 - hypothetical protein, at 1,194,352 to 1,194,816 _004961 ABIE53_004962: ABIE53_004962 - GntR family transcriptional repressor for pyruvate dehydrogenase complex, at 1,195,028 to 1,195,891 _004962
Group Condition ABIE53_006575 ABIE53_006576 ABIE53_006577 ABIE53_004961 ABIE53_004962
motility_chemotaxis Motility_chemotaxis, R2A; outer cut N.D. -1.0 N.D. -0.5 -0.2
stress R2A with Propan-1-ol 13 g/L N.D. -1.5 N.D. +0.1 +0.4
carbon source Shikimic Acid 5 mM (C) N.D. +0.3 N.D. -0.3 -1.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.2 N.D. +0.1 +0.2
stress M9 with 3-methyl-2-butenol 2 g/L N.D. -1.4 N.D. +0.2 +0.5
carbon source Shikimic Acid 5 mM (C) N.D. +0.5 N.D. -0.4 -0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -1.0 N.D. +0.7 -0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -1.4 N.D. +0.2 +0.8
stress R2A with Tricalcium phosphate 0.5 g/L N.D. +0.5 N.D. -0.1 -0.8
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -1.4 N.D. -0.0 +1.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.7 N.D. +0.3 +0.6
carbon source D-Fructose (C) N.D. -0.7 N.D. +0.7 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.4 N.D. -0.3 +0.9
carbon source m-Inositol (C) N.D. -0.6 N.D. +0.7 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.3 N.D. -0.3 +1.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.8 N.D. +0.6 +0.8
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.1 N.D. -0.4 +1.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.6 N.D. -0.4 +1.6
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.3 N.D. +0.1 +1.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.2 N.D. -0.3 +1.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -1.0 N.D. +0.3 +2.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.0 N.D. +0.4 +1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.9 N.D. +0.0 +0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.1 N.D. +0.3 +1.4
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.6 N.D. +0.2 +2.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.1 N.D. -0.3 +2.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.6 N.D. +1.4 +0.0
plant outgrowth control Plant outgrowth control N.D. +2.2 N.D. +0.1 -0.0
plant outgrowth control Plant outgrowth control N.D. +2.4 N.D. +0.2 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.0 N.D. -0.1 +4.8
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