Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_004960 and ABIE53_006573 are separated by 748 nucleotidesABIE53_006573 and ABIE53_006574 are separated by 72 nucleotidesABIE53_006574 and ABIE53_006575 are separated by 53 nucleotidesABIE53_006575 and ABIE53_006576 are separated by 353 nucleotides ABIE53_004960: ABIE53_004960 - RNA polymerase primary sigma factor, at 1,185,998 to 1,187,992 _004960 ABIE53_006573: ABIE53_006573 - 16S ribosomal RNA, at 1,188,741 to 1,190,273 _006573 ABIE53_006574: ABIE53_006574 - tRNA-Ile, at 1,190,346 to 1,190,422 _006574 ABIE53_006575: ABIE53_006575 - tRNA-Ala, at 1,190,476 to 1,190,551 _006575 ABIE53_006576: ABIE53_006576 - 23S ribosomal RNA, at 1,190,905 to 1,193,787 _006576
Group Condition ABIE53_004960 ABIE53_006573 ABIE53_006574 ABIE53_006575 ABIE53_006576
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -2.9 N.D. N.D. N.D. -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.8 N.D. N.D. N.D. -0.7
motility_chemotaxis Motility_chemotaxis, R2A; outer cut -2.4 N.D. N.D. N.D. -1.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.7 N.D. N.D. N.D. -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.1 N.D. N.D. N.D. +0.3
stress R2A with Propan-1-ol 13 g/L -2.0 N.D. N.D. N.D. -0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.2 N.D. N.D. N.D. -1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 N.D. N.D. N.D. -0.8
stress R2A with Propan-1-ol 13 g/L -1.0 N.D. N.D. N.D. -1.5
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days -1.1 N.D. N.D. N.D. -1.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -2.5 N.D. N.D. N.D. -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.0 N.D. N.D. N.D. -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 N.D. N.D. N.D. -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.5 N.D. N.D. N.D. +0.2
stress M9 with Isopropyl alcohol 21 g/L -1.8 N.D. N.D. N.D. -0.4
stress M9 with 3-methyl-3-butenol 4.5 g/L -1.8 N.D. N.D. N.D. -0.5
stress R2A with Quartz_sand 500 g/L -1.9 N.D. N.D. N.D. -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.6 N.D. N.D. N.D. -0.6
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.3 N.D. N.D. N.D. +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.4 N.D. N.D. N.D. -0.7
stress R2A with Clay 500 g/L -1.8 N.D. N.D. N.D. -0.3
stress M9 with Propan-1-ol 13 g/L -2.0 N.D. N.D. N.D. +0.1
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.8 N.D. N.D. N.D. +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.5 N.D. N.D. N.D. +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.3 N.D. N.D. N.D. -1.0
stress M9 with 3-methyl-2-butenol 2 g/L +1.9 N.D. N.D. N.D. -1.4
stress M9 with 3-methyl-2-butenol 2 g/L +1.5 N.D. N.D. N.D. -0.7
stress M9 with 3-methyl-2-butenol 2 g/L +1.8 N.D. N.D. N.D. -0.5
plant outgrowth control Plant outgrowth control +0.2 N.D. N.D. N.D. +2.2
plant outgrowth control Plant outgrowth control +0.4 N.D. N.D. N.D. +2.4
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