Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006511 and ABIE53_006512 are separated by 217 nucleotidesABIE53_006512 and ABIE53_006513 are separated by 124 nucleotidesABIE53_006513 and ABIE53_006514 are separated by 317 nucleotidesABIE53_006514 and ABIE53_006515 are separated by 32 nucleotides ABIE53_006511: ABIE53_006511 - 2-hydroxy-3-oxopropionate reductase, at 2,899,114 to 2,900,007 _006511 ABIE53_006512: ABIE53_006512 - polygalacturonase, at 2,900,225 to 2,902,228 _006512 ABIE53_006513: ABIE53_006513 - dihydroxy-acid dehydratase, at 2,902,353 to 2,904,212 _006513 ABIE53_006514: ABIE53_006514 - ACS family hexuronate transporter-like MFS transporter, at 2,904,530 to 2,905,828 _006514 ABIE53_006515: ABIE53_006515 - uronate dehydrogenase, at 2,905,861 to 2,906,718 _006515
Group Condition ABIE53_006511 ABIE53_006512 ABIE53_006513 ABIE53_006514 ABIE53_006515
carbon source D-Galacturonic Acid (C) N.D. -0.1 -0.2 -1.5 -1.8
carbon source D-Galacturonic Acid (C) N.D. -0.4 +0.1 -1.4 -1.5
carbon source L-Tryptophan (C) N.D. -0.2 -0.6 +0.1 -0.4
carbon source Glucuronamide (C) N.D. -0.3 -0.5 -0.3 +0.0
soil extract Adenine 5 mM in soil extract N.D. -0.4 -0.4 -0.0 -0.3
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.7 +0.3 -0.0 -0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. -0.1 +0.1 -0.3 -0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.4 -0.4 +0.3 -0.4
carbon source D-Sorbitol (C) N.D. -0.3 -0.3 +0.3 -0.2
carbon source D-Gluconic Acid (C) N.D. -0.3 -0.6 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days N.D. +0.4 -0.1 -0.4 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.3 -0.3 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.0 +0.6 -0.3 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.7 +0.1 +0.4 +0.4
plant outgrowth control Plant outgrowth control N.D. -0.4 +0.3 +0.3 +0.1
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.3 -0.1 +0.5 +0.2
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. -0.3 +0.4 +0.5 -0.2
plant outgrowth control Plant outgrowth control N.D. -0.3 +0.4 +0.4 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.2 +0.2 +0.3 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.5 +0.3 +0.4 +0.6
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.1 +0.2 +0.4 +0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. -0.2 +0.5 +0.7 +0.1
stress R2A with Tricalcium phosphate 0.5 g/L N.D. +0.1 +0.5 +0.3 +0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.2 +0.3 +0.3 +0.3
carbon source Shikimic Acid 5 mM (C) N.D. +0.3 +0.4 +0.3 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.3 +0.1 +0.5 +0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days N.D. +0.4 +0.4 +0.4 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days N.D. +0.5 +0.3 +0.5 +0.2
carbon source D-Glucuronic Acid (C) N.D. -0.2 -0.2 +1.4 +1.1
carbon source D-Glucuronic Acid (C) N.D. +0.1 +0.1 +1.2 +1.2
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