Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006508 and ABIE53_006509 are separated by 116 nucleotidesABIE53_006509 and ABIE53_006510 are separated by 238 nucleotidesABIE53_006510 and ABIE53_006511 are separated by 54 nucleotidesABIE53_006511 and ABIE53_006512 are separated by 217 nucleotides ABIE53_006508: ABIE53_006508 - GntR family transcriptional repressor for pyruvate dehydrogenase complex, at 2,895,547 to 2,896,290 _006508 ABIE53_006509: ABIE53_006509 - alpha-ketoglutaric semialdehyde dehydrogenase, at 2,896,407 to 2,898,014 _006509 ABIE53_006510: ABIE53_006510 - 2-dehydro-3-deoxyglucarate aldolase, at 2,898,253 to 2,899,059 _006510 ABIE53_006511: ABIE53_006511 - 2-hydroxy-3-oxopropionate reductase, at 2,899,114 to 2,900,007 _006511 ABIE53_006512: ABIE53_006512 - polygalacturonase, at 2,900,225 to 2,902,228 _006512
Group Condition ABIE53_006508 ABIE53_006509 ABIE53_006510 ABIE53_006511 ABIE53_006512
carbon source 4-Hydroxybenzoic Acid (C) -3.7 -0.6 -0.5 N.D. -0.3
carbon source Inosine (C) -4.2 -0.4 -0.0 N.D. +0.2
carbon source Inosine (C) -4.0 -0.1 -0.2 N.D. -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.7 -0.4 +0.1 N.D. +0.0
carbon source D-Galacturonic Acid (C) -0.4 -2.1 -1.2 N.D. -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.7 -0.0 +0.1 N.D. -0.3
carbon source D-Cellobiose (C) -3.7 +0.0 -0.1 N.D. +0.0
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.1 -0.2 -0.6 N.D. +0.1
carbon source D-Glucuronic Acid (C) -1.8 -1.2 -0.4 N.D. -0.2
carbon source L-Tryptophan (C) -3.6 -0.3 +0.1 N.D. +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.5 -0.1 +0.1 N.D. -0.1
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.7 +0.1 +0.2 N.D. -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.8 +0.5 +0.1 N.D. -0.2
carbon source Adenosine (C) -3.4 -0.2 +0.3 N.D. -0.2
carbon source D-Cellobiose (C) -3.4 +0.0 -0.0 N.D. +0.0
carbon source Ethanol (C) -3.4 -0.0 +0.2 N.D. +0.1
soil extract Shikimic Acid 5 mM in soil extract -3.2 +0.2 -0.1 N.D. +0.0
carbon source shik 5mM -3.3 +0.2 +0.0 N.D. +0.1
carbon source pyruvate (C) -2.9 +0.3 -0.3 N.D. -0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.3 +0.1 +0.4 N.D. +0.0
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -3.3 +0.6 +0.5 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.5 +1.2 +0.4 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.2 +0.4 +0.8 N.D. -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.9 +1.5 +0.2 N.D. +0.2
carbon source Glucuronamide (C) +2.5 -0.3 -0.8 N.D. -0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +2.6 -0.2 -0.2 N.D. -0.5
in planta Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days +3.8 +0.2 -0.0 N.D. -0.3
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +4.6 +0.8 -0.1 N.D. -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +5.2 -0.0 -0.0 N.D. +0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +4.9 +0.5 +0.3 N.D. +0.2
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