Fitness for 5 genes in Paraburkholderia graminis OAS925

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABIE53_006505	ABIE53_006506	ABIE53_006507	ABIE53_006508	ABIE53_006509
carbon source	D-Galacturonic Acid (C)	-2.7	-2.3	+0.2	-0.4	-2.1
carbon source	D-Galacturonic Acid (C)	-2.4	-2.1	+0.4	-1.5	-0.6
carbon source	4-Hydroxybenzoic Acid (C)	+0.1	-0.2	+0.0	-3.7	-0.6
carbon source	D-Cellobiose (C)	-0.1	-0.3	-0.1	-3.7	+0.0
carbon source	Inosine (C)	+0.2	+0.2	+0.2	-4.2	-0.4
carbon source	L-Tryptophan (C)	-0.0	+0.2	-0.1	-3.6	-0.3
carbon source	Inosine (C)	+0.1	+0.2	+0.0	-4.0	-0.1
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+0.0	+0.1	-3.7	-0.4
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	-0.2	+0.2	-3.7	-0.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.3	+0.3	-0.0	-3.8	+0.5
carbon source	Adenosine (C)	+0.1	-0.0	+0.1	-3.4	-0.2
soil extract	Shikimic Acid 5 mM in soil extract	-0.2	-0.2	+0.0	-3.2	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.1	+0.2	+0.0	-3.5	-0.1
carbon source	D-Glucuronic Acid (C)	+0.6	-0.8	-0.1	-1.8	-1.2
carbon source	D-Glucuronic Acid (C)	+0.8	-0.9	-0.1	-2.1	-1.0
carbon source	D-Cellobiose (C)	-0.1	-0.0	+0.2	-3.4	+0.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	+0.1	+0.2	-3.7	+0.1
carbon source	Ethanol (C)	+0.2	-0.0	+0.2	-3.4	-0.0
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.2	-0.5	+0.0	-3.3	+0.6
soil extract	Indole-3-pyruvic 5 mM in soil extract	-0.1	+0.4	+0.2	-2.7	+0.5
in planta	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.3	+1.0	+0.4	-2.1	-0.5
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.7	+0.4	+0.4	-2.4	+0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.4	+0.2	-0.1	-2.5	+1.2
carbon source	Acetylated xylan 10 g/L (C)	+0.0	-0.6	+0.5	-1.6	+1.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.5	+0.3	+0.2	-2.9	+1.5
carbon source	Shikimic Acid 5 mM (C)	+0.5	-0.1	+0.4	-1.9	+1.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days	+0.2	+0.2	-0.1	+4.6	+0.8
in planta	Plant=Medicago_truncatula; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days	-0.1	+2.0	-0.1	+3.8	+0.2
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	-0.1	+2.7	-0.0	+5.2	-0.0
in planta	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days	+0.0	+2.7	+0.0	+4.9	+0.5