Fitness for 5 genes in Paraburkholderia graminis OAS925

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500 ntABIE53_006484 and ABIE53_006485 are separated by 228 nucleotidesABIE53_006485 and ABIE53_006486 are separated by 68 nucleotidesABIE53_006486 and ABIE53_006487 are separated by 40 nucleotidesABIE53_006487 and ABIE53_006488 are separated by 115 nucleotides ABIE53_006484: ABIE53_006484 - hypothetical protein, at 2,870,086 to 2,870,244 _006484 ABIE53_006485: ABIE53_006485 - hypothetical protein, at 2,870,473 to 2,871,519 _006485 ABIE53_006486: ABIE53_006486 - TRAP transporter TAXI family solute receptor, at 2,871,588 to 2,872,667 _006486 ABIE53_006487: ABIE53_006487 - DNA-binding transcriptional MocR family regulator, at 2,872,708 to 2,874,150 _006487 ABIE53_006488: ABIE53_006488 - drug/metabolite transporter (DMT)-like permease, at 2,874,266 to 2,875,153 _006488
Group Condition ABIE53_006484 ABIE53_006485 ABIE53_006486 ABIE53_006487 ABIE53_006488
plant outgrowth control Plant outgrowth control -2.1 -0.6 -0.5 -0.2 -0.2
carbon source D,L-Malic Acid (C) -2.4 -0.1 -0.3 +0.0 -0.5
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.9 -0.2 -1.4 -0.2 +0.7
r2a outgrowth control R2A outgrowth control -2.3 -0.1 +0.1 -0.1 -0.5
biofilm biofilm; planktonic cells from 96 well plate assay in R2A -2.3 -0.2 +0.3 -0.5 -0.2
plant outgrowth control Plant outgrowth control -1.8 -0.2 -0.0 -0.5 -0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.7 -1.1 -0.3 -0.1 -0.4
plant outgrowth control Plant outgrowth control -1.8 -0.1 -0.3 -0.4 -0.0
carbon source D-Lactate (C) -1.2 +0.0 -0.0 -0.7 -0.6
stress RCH2_defined_glucose_5mM with Pyruvic 5 mM -2.4 +0.4 +0.1 -0.0 -0.5
r2a outgrowth control R2A outgrowth control -1.4 -0.1 -0.6 -0.3 +0.1
stress R2A with Propan-1-ol 13 g/L -2.1 -0.0 -0.0 -0.2 +0.2
motility_chemotaxis Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut -2.4 +0.3 -0.4 +0.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -1.3 +0.3 +0.1 -0.5 -0.5
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -2.1 -0.0 +0.2 +0.2 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days -1.7 +0.5 -0.1 +0.2 -0.5
biofilm biofilm; planktonic cells from 96 well plate assay in R2A with C30 compound -2.3 +0.4 +0.6 -0.0 -0.1
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.1 -0.3 -0.5 -0.2 -0.4
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.0 -0.7 -0.4 +0.7 +0.7
stress R2A with Chloride 200 mM -1.3 +0.8 +0.5 +0.1 +0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.9 +0.0 -0.4 +1.1 +0.7
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days -0.2 -0.6 +0.7 +1.0 -0.3
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.4 -0.6 +0.3 -0.3 -0.2
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=clay; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -0.2 +0.4 +0.7 -0.8
nitrogen source Xanthine 5 mM (N) +0.8 -0.5 +0.3 +0.3 +0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +1.9 +0.0 +0.1 +0.0 -0.5
in planta Plant=Brachypodium_distachyon; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=R2A_with_kan10; Time=21days +0.9 +0.5 +0.2 +0.6 -0.4
in planta Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.9 -0.4 +0.5 +0.9 +0.2
in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +0.7 +0.5 -0.6 +1.0 +0.7
in planta Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days +1.0 +1.1 +0.6 +0.7 +0.5
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